miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 5' -56.8 NC_005264.1 + 68229 0.66 0.895808
Target:  5'- uGACGUa----UCCg-CGCCGGCGGCg -3'
miRNA:   3'- -CUGCAgcuaaAGGagGCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 70122 0.66 0.899666
Target:  5'- aGGCGUCccuGGUUUCCcucaacgugcuugCUGCCgcGGCGGCg -3'
miRNA:   3'- -CUGCAG---CUAAAGGa------------GGCGG--UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 71790 0.69 0.728179
Target:  5'- aGCGUgGGccaauucUUCCUCCGCaUAGCGGCc -3'
miRNA:   3'- cUGCAgCUa------AAGGAGGCG-GUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 75451 0.66 0.882361
Target:  5'- uGAUGUUGAUggCCccaaagUCCGCCuggGGUGGCc -3'
miRNA:   3'- -CUGCAGCUAaaGG------AGGCGG---UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 80993 0.72 0.551407
Target:  5'- cGACGcCGAcguggCCUCCGCCuugguggucgaagccAGCGGCg -3'
miRNA:   3'- -CUGCaGCUaaa--GGAGGCGG---------------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 88334 0.67 0.860566
Target:  5'- cGAUGUCGAUcagCCUggCCGCCuuUGGCg -3'
miRNA:   3'- -CUGCAGCUAaa-GGA--GGCGGucGCCGa -5'
24739 5' -56.8 NC_005264.1 + 91009 0.67 0.845015
Target:  5'- cGCGUCGuuaUUCgCgaccCCGCgGGCGGCUu -3'
miRNA:   3'- cUGCAGCua-AAG-Ga---GGCGgUCGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 91290 0.67 0.83695
Target:  5'- gGAUGUgcaCGAg---CUCCGCCAGCaGGCg -3'
miRNA:   3'- -CUGCA---GCUaaagGAGGCGGUCG-CCGa -5'
24739 5' -56.8 NC_005264.1 + 93779 0.66 0.868042
Target:  5'- cGACGaCGAUgaCCUgC-CCGGCGGCc -3'
miRNA:   3'- -CUGCaGCUAaaGGAgGcGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 97949 0.68 0.775805
Target:  5'- cGCGUCGAggUCauCUCCGCCGccuuGCgGGCa -3'
miRNA:   3'- cUGCAGCUaaAG--GAGGCGGU----CG-CCGa -5'
24739 5' -56.8 NC_005264.1 + 107604 0.75 0.425314
Target:  5'- aGCGUaCGcgUUCUUCCGCuuCAGCGGCg -3'
miRNA:   3'- cUGCA-GCuaAAGGAGGCG--GUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 113248 0.71 0.627903
Target:  5'- -cCGUCG---UCCUggUCGCCGGCGGCg -3'
miRNA:   3'- cuGCAGCuaaAGGA--GGCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 116208 0.66 0.875308
Target:  5'- gGAUGcCGAaUUCUUCgGCCAcGCGGUc -3'
miRNA:   3'- -CUGCaGCUaAAGGAGgCGGU-CGCCGa -5'
24739 5' -56.8 NC_005264.1 + 122375 0.66 0.868042
Target:  5'- uGGCGagGGUcuUUCgCUCCGCUccgucugggGGCGGCg -3'
miRNA:   3'- -CUGCagCUA--AAG-GAGGCGG---------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 126013 0.69 0.718373
Target:  5'- -cUGUCGGUcUCCUCCucggcgugGCCcGCGGCg -3'
miRNA:   3'- cuGCAGCUAaAGGAGG--------CGGuCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 126366 0.67 0.860566
Target:  5'- cGCGUCuucgUCCUCCGCCucgucagacuCGGCUa -3'
miRNA:   3'- cUGCAGcuaaAGGAGGCGGuc--------GCCGA- -5'
24739 5' -56.8 NC_005264.1 + 128050 0.73 0.537576
Target:  5'- cGCGUCGAUggCCgcCCGCaugAGCGGCUc -3'
miRNA:   3'- cUGCAGCUAaaGGa-GGCGg--UCGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 128757 0.66 0.902194
Target:  5'- cACGUgGAagUCCUUcgCGCCAgugcGCGGCUu -3'
miRNA:   3'- cUGCAgCUaaAGGAG--GCGGU----CGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 143041 0.67 0.852889
Target:  5'- uACGUCGAcgcaUUUCUUgCgGgCAGCGGCa -3'
miRNA:   3'- cUGCAGCU----AAAGGA-GgCgGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 145142 1.08 0.003182
Target:  5'- uGACGUCGAUUUCCUCCGCCAGCGGCUg -3'
miRNA:   3'- -CUGCAGCUAAAGGAGGCGGUCGCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.