Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24739 | 5' | -56.8 | NC_005264.1 | + | 154016 | 0.7 | 0.658323 |
Target: 5'- -uUGUCGugUUCCgugCCGCgAGCGGCg -3' miRNA: 3'- cuGCAGCuaAAGGa--GGCGgUCGCCGa -5' |
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24739 | 5' | -56.8 | NC_005264.1 | + | 155590 | 0.7 | 0.658323 |
Target: 5'- uGGCGcCGA---CCUCCGCCAaguccucgcGCGGCa -3' miRNA: 3'- -CUGCaGCUaaaGGAGGCGGU---------CGCCGa -5' |
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24739 | 5' | -56.8 | NC_005264.1 | + | 156379 | 0.68 | 0.811689 |
Target: 5'- cGACGUucgccgcgccgcCGAggagUUCUCCGCCAGCGacGCc -3' miRNA: 3'- -CUGCA------------GCUaa--AGGAGGCGGUCGC--CGa -5' |
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24739 | 5' | -56.8 | NC_005264.1 | + | 157386 | 0.69 | 0.757071 |
Target: 5'- cGGCGgggCGGUUaggaccUCCUCCGgCgagAGCGGCg -3' miRNA: 3'- -CUGCa--GCUAA------AGGAGGCgG---UCGCCGa -5' |
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24739 | 5' | -56.8 | NC_005264.1 | + | 159119 | 0.67 | 0.82028 |
Target: 5'- aGACGUCGGagaagcCCGCCcGCGGCa -3' miRNA: 3'- -CUGCAGCUaaaggaGGCGGuCGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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