miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24739 5' -56.8 NC_005264.1 + 145142 1.08 0.003182
Target:  5'- uGACGUCGAUUUCCUCCGCCAGCGGCUg -3'
miRNA:   3'- -CUGCAGCUAAAGGAGGCGGUCGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 13256 0.66 0.868042
Target:  5'- cGGCaUCGAgcagccccCCUCCGCCcGgGGCUg -3'
miRNA:   3'- -CUGcAGCUaaa-----GGAGGCGGuCgCCGA- -5'
24739 5' -56.8 NC_005264.1 + 58462 0.66 0.876023
Target:  5'- uGGCGUCGAUcucgucugggaacgCCUgacggucggcCCGCCugAGCGGCa -3'
miRNA:   3'- -CUGCAGCUAaa------------GGA----------GGCGG--UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 43661 0.66 0.902194
Target:  5'- aGGCGUUGGccgcugaaccgUUCUUUggUGCCGGCGGCa -3'
miRNA:   3'- -CUGCAGCUa----------AAGGAG--GCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 155590 0.7 0.658323
Target:  5'- uGGCGcCGA---CCUCCGCCAaguccucgcGCGGCa -3'
miRNA:   3'- -CUGCaGCUaaaGGAGGCGGU---------CGCCGa -5'
24739 5' -56.8 NC_005264.1 + 57057 0.7 0.708494
Target:  5'- uACGUUGGUagagcgUCCgUCGUCAGCGGCg -3'
miRNA:   3'- cUGCAGCUAa-----AGGaGGCGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 71790 0.69 0.728179
Target:  5'- aGCGUgGGccaauucUUCCUCCGCaUAGCGGCc -3'
miRNA:   3'- cUGCAgCUa------AAGGAGGCG-GUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 157386 0.69 0.757071
Target:  5'- cGGCGgggCGGUUaggaccUCCUCCGgCgagAGCGGCg -3'
miRNA:   3'- -CUGCa--GCUAA------AGGAGGCgG---UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 156379 0.68 0.811689
Target:  5'- cGACGUucgccgcgccgcCGAggagUUCUCCGCCAGCGacGCc -3'
miRNA:   3'- -CUGCA------------GCUaa--AGGAGGCGGUCGC--CGa -5'
24739 5' -56.8 NC_005264.1 + 122375 0.66 0.868042
Target:  5'- uGGCGagGGUcuUUCgCUCCGCUccgucugggGGCGGCg -3'
miRNA:   3'- -CUGCagCUA--AAG-GAGGCGG---------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 143041 0.67 0.852889
Target:  5'- uACGUCGAcgcaUUUCUUgCgGgCAGCGGCa -3'
miRNA:   3'- cUGCAGCU----AAAGGA-GgCgGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 12130 0.68 0.784987
Target:  5'- -cUGaCGA-UUCCUCCGCCGGC-GCUg -3'
miRNA:   3'- cuGCaGCUaAAGGAGGCGGUCGcCGA- -5'
24739 5' -56.8 NC_005264.1 + 107604 0.75 0.425314
Target:  5'- aGCGUaCGcgUUCUUCCGCuuCAGCGGCg -3'
miRNA:   3'- cUGCA-GCuaAAGGAGGCG--GUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 126366 0.67 0.860566
Target:  5'- cGCGUCuucgUCCUCCGCCucgucagacuCGGCUa -3'
miRNA:   3'- cUGCAGcuaaAGGAGGCGGuc--------GCCGA- -5'
24739 5' -56.8 NC_005264.1 + 80993 0.72 0.551407
Target:  5'- cGACGcCGAcguggCCUCCGCCuugguggucgaagccAGCGGCg -3'
miRNA:   3'- -CUGCaGCUaaa--GGAGGCGG---------------UCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 62963 0.69 0.766497
Target:  5'- cGGgGUCaGAcUUCC-CCGCCAccGCGGCUu -3'
miRNA:   3'- -CUgCAG-CUaAAGGaGGCGGU--CGCCGA- -5'
24739 5' -56.8 NC_005264.1 + 93779 0.66 0.868042
Target:  5'- cGACGaCGAUgaCCUgC-CCGGCGGCc -3'
miRNA:   3'- -CUGCaGCUAaaGGAgGcGGUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 116208 0.66 0.875308
Target:  5'- gGAUGcCGAaUUCUUCgGCCAcGCGGUc -3'
miRNA:   3'- -CUGCaGCUaAAGGAGgCGGU-CGCCGa -5'
24739 5' -56.8 NC_005264.1 + 154016 0.7 0.658323
Target:  5'- -uUGUCGugUUCCgugCCGCgAGCGGCg -3'
miRNA:   3'- cuGCAGCuaAAGGa--GGCGgUCGCCGa -5'
24739 5' -56.8 NC_005264.1 + 126013 0.69 0.718373
Target:  5'- -cUGUCGGUcUCCUCCucggcgugGCCcGCGGCg -3'
miRNA:   3'- cuGCAGCUAaAGGAGG--------CGGuCGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.