Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24740 | 3' | -56.6 | NC_005264.1 | + | 153425 | 0.68 | 0.856259 |
Target: 5'- -cGCCUCGCUGga-UGAGGCGCaGUCa -3' miRNA: 3'- ccUGGAGCGAUggcACUCCGUG-CAGc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 12421 | 0.68 | 0.856259 |
Target: 5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3' miRNA: 3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 109969 | 0.68 | 0.856259 |
Target: 5'- --cCCUCGCUcGCgCGUGu-GCACGUCGu -3' miRNA: 3'- ccuGGAGCGA-UG-GCACucCGUGCAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 131448 | 0.68 | 0.856259 |
Target: 5'- cGGCC-CGCUACgUGcuugGAGGCGCGgugCGg -3' miRNA: 3'- cCUGGaGCGAUG-GCa---CUCCGUGCa--GC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 3751 | 0.68 | 0.840712 |
Target: 5'- gGGGCCUC-UUGCCGccGGGGCGCugcgggcccuugGUCGa -3' miRNA: 3'- -CCUGGAGcGAUGGCa-CUCCGUG------------CAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 122777 | 0.68 | 0.840712 |
Target: 5'- gGGGCCUC-UUGCCGccGGGGCGCugcgggcccuugGUCGa -3' miRNA: 3'- -CCUGGAGcGAUGGCa-CUCCGUG------------CAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 132351 | 0.68 | 0.832664 |
Target: 5'- uGGCCUCGCUACCu----GUACGUCa -3' miRNA: 3'- cCUGGAGCGAUGGcacucCGUGCAGc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 113684 | 0.68 | 0.816051 |
Target: 5'- -uGCCgcgGCcGCUGUGGGGCAUGUCu -3' miRNA: 3'- ccUGGag-CGaUGGCACUCCGUGCAGc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 48363 | 0.69 | 0.789955 |
Target: 5'- cGGCCUCGUUGCgcagugccgCGUcGAGGCGC-UCGa -3' miRNA: 3'- cCUGGAGCGAUG---------GCA-CUCCGUGcAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 101331 | 0.69 | 0.786378 |
Target: 5'- uGGAUauacgCGCggcgcuagccgagACCGcGGGGCGCGUCGg -3' miRNA: 3'- -CCUGga---GCGa------------UGGCaCUCCGUGCAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 151847 | 0.69 | 0.780973 |
Target: 5'- gGGGCCgcCGCUccggcggcgACaCGUGGGGgGCGUCu -3' miRNA: 3'- -CCUGGa-GCGA---------UG-GCACUCCgUGCAGc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 83116 | 0.69 | 0.780973 |
Target: 5'- -cGCCgacgggCGCcaagGCCGcgGAGGCGCGUCu -3' miRNA: 3'- ccUGGa-----GCGa---UGGCa-CUCCGUGCAGc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 100205 | 0.69 | 0.771864 |
Target: 5'- cGACUUCGCUGagcuCCGcGGGGCGCaGUUGc -3' miRNA: 3'- cCUGGAGCGAU----GGCaCUCCGUG-CAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 131660 | 0.7 | 0.724703 |
Target: 5'- cGGugCcCGCcgccagACCGuUGGcGGCACGUCGg -3' miRNA: 3'- -CCugGaGCGa-----UGGC-ACU-CCGUGCAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 34120 | 0.7 | 0.715008 |
Target: 5'- uGGCCuUCGCUGCCucugGUGAcgGGCGCGUa- -3' miRNA: 3'- cCUGG-AGCGAUGG----CACU--CCGUGCAgc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 69262 | 0.7 | 0.715008 |
Target: 5'- -cGCCUcaucCGCUGCCaUGGGGCGCG-CGa -3' miRNA: 3'- ccUGGA----GCGAUGGcACUCCGUGCaGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 84957 | 0.71 | 0.655713 |
Target: 5'- gGGugCUCGCUugCGgccAGGCugcugcguuaGCGUCGu -3' miRNA: 3'- -CCugGAGCGAugGCac-UCCG----------UGCAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 162250 | 0.73 | 0.546409 |
Target: 5'- -cGCCUCGCUGCCGgagucGGGCGaGUCGu -3' miRNA: 3'- ccUGGAGCGAUGGCac---UCCGUgCAGC- -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 104419 | 0.74 | 0.52702 |
Target: 5'- aGACCUguucuucagCGCUACCGUGGGGgGCGa-- -3' miRNA: 3'- cCUGGA---------GCGAUGGCACUCCgUGCagc -5' |
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24740 | 3' | -56.6 | NC_005264.1 | + | 146088 | 1.11 | 0.002406 |
Target: 5'- gGGACCUCGCUACCGUGAGGCACGUCGa -3' miRNA: 3'- -CCUGGAGCGAUGGCACUCCGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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