Results 21 - 30 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24740 | 5' | -52.4 | NC_005264.1 | + | 31115 | 0.68 | 0.960032 |
Target: 5'- cUAgGAUccGGUCCCGGGCGuGGuCCGc -3' miRNA: 3'- -GUgUUGuaUCAGGGUUCGCuCCuGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 30878 | 0.68 | 0.948027 |
Target: 5'- gGCAACGgcGUCUCGAuCGGGGACgCGu -3' miRNA: 3'- gUGUUGUauCAGGGUUcGCUCCUG-GC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 26144 | 0.69 | 0.938821 |
Target: 5'- -cCAugAU-GUCCCAggccgcGGCGAGGACUu -3' miRNA: 3'- guGUugUAuCAGGGU------UCGCUCCUGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 24300 | 0.66 | 0.978006 |
Target: 5'- aCGCGguuACAUccacGGUgCCGAGCGuugaaGGGGCCGc -3' miRNA: 3'- -GUGU---UGUA----UCAgGGUUCGC-----UCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 8464 | 0.66 | 0.982399 |
Target: 5'- cCAUAGCAUccgccagcugGGUcCCCAAGCagcagaguGGGCCGg -3' miRNA: 3'- -GUGUUGUA----------UCA-GGGUUCGcu------CCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 4701 | 0.67 | 0.972853 |
Target: 5'- uGCGACGU--UCUCGGGUGAGGcCCa -3' miRNA: 3'- gUGUUGUAucAGGGUUCGCUCCuGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 4582 | 0.68 | 0.943546 |
Target: 5'- aGCAACAUGGUgCUCAAGCGAGc-UCGc -3' miRNA: 3'- gUGUUGUAUCA-GGGUUCGCUCcuGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 3814 | 0.67 | 0.972853 |
Target: 5'- cCGCGAguUcgGG-CCCGGGCG-GGGCCGc -3' miRNA: 3'- -GUGUUguA--UCaGGGUUCGCuCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 2968 | 0.67 | 0.968142 |
Target: 5'- -cCGGCAUAGUUCCGaccacgaauccaucgAGCGccgacuGGGCCGg -3' miRNA: 3'- guGUUGUAUCAGGGU---------------UCGCu-----CCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 2920 | 0.73 | 0.785624 |
Target: 5'- aGCGACGgAGUCgCCGAGCGAgacGGACgGg -3' miRNA: 3'- gUGUUGUaUCAG-GGUUCGCU---CCUGgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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