Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24740 | 5' | -52.4 | NC_005264.1 | + | 146122 | 1.08 | 0.007844 |
Target: 5'- gCACAACAUAGUCCCAAGCGAGGACCGc -3' miRNA: 3'- -GUGUUGUAUCAGGGUUCGCUCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 2920 | 0.73 | 0.785624 |
Target: 5'- aGCGACGgAGUCgCCGAGCGAgacGGACgGg -3' miRNA: 3'- gUGUUGUaUCAG-GGUUCGCU---CCUGgC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 63698 | 0.73 | 0.785624 |
Target: 5'- gCGCGGCAaGGUCCCGuGCGAGaACCc -3' miRNA: 3'- -GUGUUGUaUCAGGGUuCGCUCcUGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 121946 | 0.73 | 0.785624 |
Target: 5'- aGCGACGgAGUCgCCGAGCGAgacGGACgGg -3' miRNA: 3'- gUGUUGUaUCAG-GGUUCGCU---CCUGgC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 96042 | 0.71 | 0.838902 |
Target: 5'- aCGCcGC-UGG-CCCAGGCG-GGACCGu -3' miRNA: 3'- -GUGuUGuAUCaGGGUUCGCuCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 77708 | 0.7 | 0.898815 |
Target: 5'- uCACGGCGcaggAGUUCCAAGaaccgGAGGACUGc -3' miRNA: 3'- -GUGUUGUa---UCAGGGUUCg----CUCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 26144 | 0.69 | 0.938821 |
Target: 5'- -cCAugAU-GUCCCAggccgcGGCGAGGACUu -3' miRNA: 3'- guGUugUAuCAGGGU------UCGCUCCUGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 4582 | 0.68 | 0.943546 |
Target: 5'- aGCAACAUGGUgCUCAAGCGAGc-UCGc -3' miRNA: 3'- gUGUUGUAUCA-GGGUUCGCUCcuGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 149904 | 0.68 | 0.948027 |
Target: 5'- gGCAACGgcGUCUCGAuCGGGGACgCGu -3' miRNA: 3'- gUGUUGUauCAGGGUUcGCUCCUG-GC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 30878 | 0.68 | 0.948027 |
Target: 5'- gGCAACGgcGUCUCGAuCGGGGACgCGu -3' miRNA: 3'- gUGUUGUauCAGGGUUcGCUCCUG-GC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 31115 | 0.68 | 0.960032 |
Target: 5'- cUAgGAUccGGUCCCGGGCGuGGuCCGc -3' miRNA: 3'- -GUgUUGuaUCAGGGUUCGCuCCuGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 150142 | 0.68 | 0.960032 |
Target: 5'- cUAgGAUccGGUCCCGGGCGuGGuCCGc -3' miRNA: 3'- -GUgUUGuaUCAGGGUUCGCuCCuGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 59981 | 0.68 | 0.960032 |
Target: 5'- aCGCGGCgGUGG-CCgCGAGCGAGacGGCCGc -3' miRNA: 3'- -GUGUUG-UAUCaGG-GUUCGCUC--CUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 86396 | 0.67 | 0.966879 |
Target: 5'- gCGCAGCGU-GUCCUucgaGAGCucucuaGGGACCGu -3' miRNA: 3'- -GUGUUGUAuCAGGG----UUCGc-----UCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 158764 | 0.67 | 0.968142 |
Target: 5'- gGCGACAUGGggccUCCCugcgacauagacgaaGAG-GAGGACCa -3' miRNA: 3'- gUGUUGUAUC----AGGG---------------UUCgCUCCUGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 2968 | 0.67 | 0.968142 |
Target: 5'- -cCGGCAUAGUUCCGaccacgaauccaucgAGCGccgacuGGGCCGg -3' miRNA: 3'- guGUUGUAUCAGGGU---------------UCGCu-----CCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 35897 | 0.67 | 0.969972 |
Target: 5'- gGCAGCGUuacGUCCCcccaguacuccGGCGAGaGACCu -3' miRNA: 3'- gUGUUGUAu--CAGGGu----------UCGCUC-CUGGc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 53681 | 0.67 | 0.972853 |
Target: 5'- aACAAgGUGGaCCUGAGCGGGGAg-- -3' miRNA: 3'- gUGUUgUAUCaGGGUUCGCUCCUggc -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 122840 | 0.67 | 0.972853 |
Target: 5'- cCGCGAguUcgGG-CCCGGGCG-GGGCCGc -3' miRNA: 3'- -GUGUUguA--UCaGGGUUCGCuCCUGGC- -5' |
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24740 | 5' | -52.4 | NC_005264.1 | + | 4701 | 0.67 | 0.972853 |
Target: 5'- uGCGACGU--UCUCGGGUGAGGcCCa -3' miRNA: 3'- gUGUUGUAucAGGGUUCGCUCCuGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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