Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24740 | 5' | -52.4 | NC_005264.1 | + | 30878 | 0.68 | 0.948027 |
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Target: 5'- gGCAACGgcGUCUCGAuCGGGGACgCGu -3' miRNA: 3'- gUGUUGUauCAGGGUUcGCUCCUG-GC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 149904 | 0.68 | 0.948027 |
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Target: 5'- gGCAACGgcGUCUCGAuCGGGGACgCGu -3' miRNA: 3'- gUGUUGUauCAGGGUUcGCUCCUG-GC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 4582 | 0.68 | 0.943546 |
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Target: 5'- aGCAACAUGGUgCUCAAGCGAGc-UCGc -3' miRNA: 3'- gUGUUGUAUCA-GGGUUCGCUCcuGGC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 26144 | 0.69 | 0.938821 |
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Target: 5'- -cCAugAU-GUCCCAggccgcGGCGAGGACUu -3' miRNA: 3'- guGUugUAuCAGGGU------UCGCUCCUGGc -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 77708 | 0.7 | 0.898815 |
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Target: 5'- uCACGGCGcaggAGUUCCAAGaaccgGAGGACUGc -3' miRNA: 3'- -GUGUUGUa---UCAGGGUUCg----CUCCUGGC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 96042 | 0.71 | 0.838902 |
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Target: 5'- aCGCcGC-UGG-CCCAGGCG-GGACCGu -3' miRNA: 3'- -GUGuUGuAUCaGGGUUCGCuCCUGGC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 2920 | 0.73 | 0.785624 |
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Target: 5'- aGCGACGgAGUCgCCGAGCGAgacGGACgGg -3' miRNA: 3'- gUGUUGUaUCAG-GGUUCGCU---CCUGgC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 63698 | 0.73 | 0.785624 |
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Target: 5'- gCGCGGCAaGGUCCCGuGCGAGaACCc -3' miRNA: 3'- -GUGUUGUaUCAGGGUuCGCUCcUGGc -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 121946 | 0.73 | 0.785624 |
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Target: 5'- aGCGACGgAGUCgCCGAGCGAgacGGACgGg -3' miRNA: 3'- gUGUUGUaUCAG-GGUUCGCU---CCUGgC- -5' |
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| 24740 | 5' | -52.4 | NC_005264.1 | + | 146122 | 1.08 | 0.007844 |
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Target: 5'- gCACAACAUAGUCCCAAGCGAGGACCGc -3' miRNA: 3'- -GUGUUGUAUCAGGGUUCGCUCCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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