miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 26073 0.66 0.609865
Target:  5'- uGUGCCUagccCGGCgCUguuuuuggccauaGCuaaacuGGCCACCGCg -3'
miRNA:   3'- gCACGGA----GCUGgGG-------------CGu-----CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 76954 0.66 0.630157
Target:  5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3'
miRNA:   3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5'
24741 3' -62.9 NC_005264.1 + 145165 0.66 0.638859
Target:  5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3'
miRNA:   3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5'
24741 3' -62.9 NC_005264.1 + 101397 0.66 0.630157
Target:  5'- --aGCaaCUCGGCgCCgaggaGCGGGCCGCCGa -3'
miRNA:   3'- gcaCG--GAGCUGgGG-----CGUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 236 0.66 0.61083
Target:  5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3'
miRNA:   3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5'
24741 3' -62.9 NC_005264.1 + 121190 0.66 0.639826
Target:  5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3'
miRNA:   3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 117176 0.66 0.61083
Target:  5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3'
miRNA:   3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 131648 0.66 0.62049
Target:  5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3'
miRNA:   3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 109948 0.66 0.639826
Target:  5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3'
miRNA:   3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69000 0.66 0.61083
Target:  5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3'
miRNA:   3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 32910 0.66 0.64949
Target:  5'- gCGU-UCUCGAUCgcgcaggggUCGCGGGgCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCUGG---------GGCGUCCgGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 113457 0.67 0.572396
Target:  5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3'
miRNA:   3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 158560 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39555 0.67 0.581962
Target:  5'- gCGUGUUgauuaGAucCCCCGCGGGCCcagagaguauGCUGCc -3'
miRNA:   3'- -GCACGGag---CU--GGGGCGUCCGG----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 61486 0.67 0.581962
Target:  5'- gCGcGCCgacgCG-CCCCGCGgucucGGCUagcGCCGCg -3'
miRNA:   3'- -GCaCGGa---GCuGGGGCGU-----CCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114747 0.67 0.581962
Target:  5'- gCGUGCa--GAaCCCGCGcGGCCGCgGUa -3'
miRNA:   3'- -GCACGgagCUgGGGCGU-CCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 71603 0.67 0.581962
Target:  5'- --gGCCUgGAUagagcuaCGCGGGCUAUCGCg -3'
miRNA:   3'- gcaCGGAgCUGgg-----GCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 7580 0.67 0.591561
Target:  5'- --cGCCU--ACCCCGC--GCCGCUGCg -3'
miRNA:   3'- gcaCGGAgcUGGGGCGucCGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.