Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 44133 | 0.67 | 0.598295 |
Target: 5'- --cGUCUCGcagcccuucucccaACaCCCGCAGGgCaACCGCg -3' miRNA: 3'- gcaCGGAGC--------------UG-GGGCGUCCgG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 161628 | 0.67 | 0.601185 |
Target: 5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3' miRNA: 3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62917 | 0.67 | 0.601185 |
Target: 5'- --aGCUUa-GCCgCGCGGGCUugCGCg -3' miRNA: 3'- gcaCGGAgcUGGgGCGUCCGGugGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 113457 | 0.67 | 0.572396 |
Target: 5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3' miRNA: 3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158560 | 0.67 | 0.562867 |
Target: 5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3' miRNA: 3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158501 | 0.67 | 0.562867 |
Target: 5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3' miRNA: 3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42601 | 0.67 | 0.601185 |
Target: 5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3' miRNA: 3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 151780 | 0.67 | 0.591561 |
Target: 5'- gCGgGUaCUUG-CCCCGcCAGGCC-CCGCc -3' miRNA: 3'- -GCaCG-GAGCuGGGGC-GUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65412 | 0.67 | 0.591561 |
Target: 5'- --cGCggCGGCgCCCGCAGcGCuCACUGCc -3' miRNA: 3'- gcaCGgaGCUG-GGGCGUC-CG-GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 25135 | 0.67 | 0.581962 |
Target: 5'- cCGUGUCUCGGCCgaGUAGuUgGCCGUg -3' miRNA: 3'- -GCACGGAGCUGGggCGUCcGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 93014 | 0.67 | 0.572396 |
Target: 5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3' miRNA: 3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 82494 | 0.67 | 0.572396 |
Target: 5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3' miRNA: 3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75900 | 0.67 | 0.601185 |
Target: 5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3' miRNA: 3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 99194 | 0.67 | 0.601185 |
Target: 5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3' miRNA: 3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 124026 | 0.67 | 0.553382 |
Target: 5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3' miRNA: 3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 153021 | 0.67 | 0.553382 |
Target: 5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3' miRNA: 3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 32537 | 0.67 | 0.553382 |
Target: 5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3' miRNA: 3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62743 | 0.67 | 0.561917 |
Target: 5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3' miRNA: 3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90511 | 0.67 | 0.562867 |
Target: 5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3' miRNA: 3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 63446 | 0.67 | 0.601185 |
Target: 5'- -uUGCCUgGcauACCCCGCuccGCCGuuGCg -3' miRNA: 3'- gcACGGAgC---UGGGGCGuc-CGGUggCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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