miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 69054 0.67 0.562867
Target:  5'- --gGCCgCGGCCgCCggGCAGGUCAUCGUc -3'
miRNA:   3'- gcaCGGaGCUGG-GG--CGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 4999 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 124026 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 153021 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 32537 0.67 0.553382
Target:  5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3'
miRNA:   3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 33994 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62743 0.67 0.561917
Target:  5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3'
miRNA:   3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 13591 0.68 0.533625
Target:  5'- --gGCUUCGGCCCCaGCGccacaccGGCCagcgacagugACCGCu -3'
miRNA:   3'- gcaCGGAGCUGGGG-CGU-------CCGG----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 67008 0.68 0.544886
Target:  5'- aGUGCUgccuggacggagcggCGGCCUugCGCAGGCCcCCGa -3'
miRNA:   3'- gCACGGa--------------GCUGGG--GCGUCCGGuGGCg -5'
24741 3' -62.9 NC_005264.1 + 39351 0.68 0.543945
Target:  5'- --cGCCcagCaACCgCGC-GGCCACCGCa -3'
miRNA:   3'- gcaCGGa--GcUGGgGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 16426 0.68 0.543945
Target:  5'- --gGCCgcUCGACUgCCGCGGGgCCugcCCGCg -3'
miRNA:   3'- gcaCGG--AGCUGG-GGCGUCC-GGu--GGCG- -5'
24741 3' -62.9 NC_005264.1 + 98086 0.68 0.543945
Target:  5'- uGUGCCcCGgccGCCCCG-GGGUUACCGg -3'
miRNA:   3'- gCACGGaGC---UGGGGCgUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 40820 0.68 0.506773
Target:  5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3'
miRNA:   3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 158741 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 9324 0.68 0.515971
Target:  5'- gGUuCCguUCGuCCCCGCcagGGGCgGCCGCc -3'
miRNA:   3'- gCAcGG--AGCuGGGGCG---UCCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114434 0.68 0.515971
Target:  5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3'
miRNA:   3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 159019 0.68 0.525235
Target:  5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3'
miRNA:   3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 137610 0.68 0.532691
Target:  5'- --cGCCUCaACUCUGCcggcacugcccuGGCCACCGUg -3'
miRNA:   3'- gcaCGGAGcUGGGGCGu-----------CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 64289 0.68 0.525235
Target:  5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3'
miRNA:   3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.