Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 58257 | 0.68 | 0.497646 |
Target: 5'- uCG-GCC-CGAUCCCGUGGGCgGCaugGCg -3' miRNA: 3'- -GCaCGGaGCUGGGGCGUCCGgUGg--CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122786 | 0.68 | 0.488594 |
Target: 5'- --gGCCcgCGACCUCGaaaccagaguguUAGcGCCACCGCa -3' miRNA: 3'- gcaCGGa-GCUGGGGC------------GUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 67008 | 0.68 | 0.544886 |
Target: 5'- aGUGCUgccuggacggagcggCGGCCUugCGCAGGCCcCCGa -3' miRNA: 3'- gCACGGa--------------GCUGGG--GCGUCCGGuGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 39351 | 0.68 | 0.543945 |
Target: 5'- --cGCCcagCaACCgCGC-GGCCACCGCa -3' miRNA: 3'- gcaCGGa--GcUGGgGCGuCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 16426 | 0.68 | 0.543945 |
Target: 5'- --gGCCgcUCGACUgCCGCGGGgCCugcCCGCg -3' miRNA: 3'- gcaCGG--AGCUGG-GGCGUCC-GGu--GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 98086 | 0.68 | 0.543945 |
Target: 5'- uGUGCCcCGgccGCCCCG-GGGUUACCGg -3' miRNA: 3'- gCACGGaGC---UGGGGCgUCCGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 83402 | 0.68 | 0.543945 |
Target: 5'- -cUGCCcccggaGACCCCGCaccgcccacgcuGGGuuCCGCCGCg -3' miRNA: 3'- gcACGGag----CUGGGGCG------------UCC--GGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 86767 | 0.68 | 0.534561 |
Target: 5'- --aGCCgUCGACgCUCGCGGcGUCGCgGCg -3' miRNA: 3'- gcaCGG-AGCUG-GGGCGUC-CGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42003 | 0.68 | 0.534561 |
Target: 5'- uGU-CUUCGugCUCGUcGGCCACgGCg -3' miRNA: 3'- gCAcGGAGCugGGGCGuCCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 36716 | 0.68 | 0.534561 |
Target: 5'- aGUGCCaUCGGCUCa----GCCGCCGCg -3' miRNA: 3'- gCACGG-AGCUGGGgcgucCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 13591 | 0.68 | 0.533625 |
Target: 5'- --gGCUUCGGCCCCaGCGccacaccGGCCagcgacagugACCGCu -3' miRNA: 3'- gcaCGGAGCUGGGG-CGU-------CCGG----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 137610 | 0.68 | 0.532691 |
Target: 5'- --cGCCUCaACUCUGCcggcacugcccuGGCCACCGUg -3' miRNA: 3'- gcaCGGAGcUGGGGCGu-----------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 159019 | 0.68 | 0.525235 |
Target: 5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3' miRNA: 3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64289 | 0.68 | 0.525235 |
Target: 5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3' miRNA: 3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114434 | 0.68 | 0.515971 |
Target: 5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3' miRNA: 3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 9324 | 0.68 | 0.515971 |
Target: 5'- gGUuCCguUCGuCCCCGCcagGGGCgGCCGCc -3' miRNA: 3'- gCAcGG--AGCuGGGGCG---UCCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158741 | 0.68 | 0.506773 |
Target: 5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3' miRNA: 3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 40820 | 0.68 | 0.506773 |
Target: 5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3' miRNA: 3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 41361 | 0.69 | 0.453198 |
Target: 5'- aGUGCCgccgcgaaaaCGGCCUcucuaauguacgCGUAGGCCGCgCGCu -3' miRNA: 3'- gCACGGa---------GCUGGG------------GCGUCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 149372 | 0.69 | 0.452331 |
Target: 5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3' miRNA: 3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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