miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 85064 0.69 0.43603
Target:  5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3'
miRNA:   3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 30345 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 92179 0.69 0.461919
Target:  5'- -cUGCCggCGGCgCCGC-GGCCACgGUg -3'
miRNA:   3'- gcACGGa-GCUGgGGCGuCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 144776 0.69 0.444568
Target:  5'- -aUGCCcgCGcGCCCuggcuCGCGGcGCCGCCGCu -3'
miRNA:   3'- gcACGGa-GC-UGGG-----GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 149372 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 154840 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 132801 0.69 0.470727
Target:  5'- aCGUGCCguacgCGAUCCUuCAGGUCucaCGCg -3'
miRNA:   3'- -GCACGGa----GCUGGGGcGUCCGGug-GCG- -5'
24741 3' -62.9 NC_005264.1 + 134499 0.69 0.444568
Target:  5'- gCGUGUCgccCGcuaCCCGUAcGCCGCCGCa -3'
miRNA:   3'- -GCACGGa--GCug-GGGCGUcCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 35814 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 38784 0.7 0.410999
Target:  5'- aCGUGCCUCGucccggugacguACUCCGC-GGCgACCccgGCg -3'
miRNA:   3'- -GCACGGAGC------------UGGGGCGuCCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 128722 0.7 0.427588
Target:  5'- uCGcGCCUCGACgCUGUuucGGCCGCUGa -3'
miRNA:   3'- -GCaCGGAGCUGgGGCGu--CCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 64504 0.7 0.427588
Target:  5'- aGUcGCCUgGACCgCGCuGuucuguccgcGCCGCCGCg -3'
miRNA:   3'- gCA-CGGAgCUGGgGCGuC----------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 157810 0.7 0.410999
Target:  5'- aCGUGCCUCGucccggugacguACUCCGC-GGCgACCccgGCg -3'
miRNA:   3'- -GCACGGAGC------------UGGGGCGuCCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 33331 0.7 0.386878
Target:  5'- cCGUcGCCUcCGGCgCCGCcaaacccuGcGCCGCCGCa -3'
miRNA:   3'- -GCA-CGGA-GCUGgGGCGu-------C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 71733 0.7 0.419243
Target:  5'- --aGCCagGACUCCGCGacaGCCAUCGCg -3'
miRNA:   3'- gcaCGGagCUGGGGCGUc--CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 134513 0.7 0.386878
Target:  5'- uCGUGCCgauacCGACUagaCGUAGGCgCGCgGCa -3'
miRNA:   3'- -GCACGGa----GCUGGg--GCGUCCG-GUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 139806 0.7 0.386878
Target:  5'- gCGUGCCgUCGGCCgUCGCGGGaCGaaaCGCg -3'
miRNA:   3'- -GCACGG-AGCUGG-GGCGUCCgGUg--GCG- -5'
24741 3' -62.9 NC_005264.1 + 143732 0.7 0.410999
Target:  5'- aGUG-CUCGuCUCCGC--GCCGCCGCg -3'
miRNA:   3'- gCACgGAGCuGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 65583 0.71 0.371324
Target:  5'- cCGUGCCaaGGCCCgGC-GGCCACaucuuGCu -3'
miRNA:   3'- -GCACGGagCUGGGgCGuCCGGUGg----CG- -5'
24741 3' -62.9 NC_005264.1 + 119922 0.71 0.363709
Target:  5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3'
miRNA:   3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.