Results 121 - 140 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 133207 | 0.71 | 0.379048 |
Target: 5'- -cUGCCUgGAcgaccucuuuaCCCCGUGcGCCGCCGCg -3' miRNA: 3'- gcACGGAgCU-----------GGGGCGUcCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 48930 | 0.71 | 0.379048 |
Target: 5'- --aGUCUCG-CCCgaugggcacuugUGCGGGCCGCUGCg -3' miRNA: 3'- gcaCGGAGCuGGG------------GCGUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 147593 | 0.71 | 0.374401 |
Target: 5'- aGUGCCcccUCGAgCCCgcguugaacuuagagCGCAGGaUCGCCGCg -3' miRNA: 3'- gCACGG---AGCU-GGG---------------GCGUCC-GGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 44775 | 0.71 | 0.372092 |
Target: 5'- gGUGCCcgcggcgaucguugcCGACgCCGC-GGUCGCCGCg -3' miRNA: 3'- gCACGGa--------------GCUGgGGCGuCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 896 | 0.71 | 0.363709 |
Target: 5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3' miRNA: 3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69834 | 0.71 | 0.356203 |
Target: 5'- -cUGCCUUGAcugcCCCCGCuacGGCCgguGCUGCg -3' miRNA: 3'- gcACGGAGCU----GGGGCGu--CCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 160418 | 0.71 | 0.339355 |
Target: 5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3' miRNA: 3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 119922 | 0.71 | 0.363709 |
Target: 5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3' miRNA: 3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65583 | 0.71 | 0.371324 |
Target: 5'- cCGUGCCaaGGCCCgGC-GGCCACaucuuGCu -3' miRNA: 3'- -GCACGGagCUGGGgCGuCCGGUGg----CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 41391 | 0.71 | 0.339355 |
Target: 5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3' miRNA: 3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 132268 | 0.72 | 0.332212 |
Target: 5'- gCGUGuCCUcuccugCGACCCCGCcGGUagaagugaucgcgaCACCGCg -3' miRNA: 3'- -GCAC-GGA------GCUGGGGCGuCCG--------------GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 116238 | 0.72 | 0.30013 |
Target: 5'- cCGU-CCUCG-CCCCGCAGGgacagagccuCCGCaCGCg -3' miRNA: 3'- -GCAcGGAGCuGGGGCGUCC----------GGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 38851 | 0.72 | 0.30013 |
Target: 5'- gCGUGCCUaCGucgcggagcuCCUCGCGGGUguaCACCGCc -3' miRNA: 3'- -GCACGGA-GCu---------GGGGCGUCCG---GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 43920 | 0.72 | 0.306751 |
Target: 5'- cCGUcGCCUCGACgUCGaGGGCCAaguaCGCg -3' miRNA: 3'- -GCA-CGGAGCUGgGGCgUCCGGUg---GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 57967 | 0.72 | 0.313482 |
Target: 5'- uGUGCCuaucgucaUCGGaguCCCCGCGcGGCgGCCGUg -3' miRNA: 3'- gCACGG--------AGCU---GGGGCGU-CCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75219 | 0.72 | 0.320324 |
Target: 5'- -cUGCaUCGGCCCUGCGcGGCgGCCGUc -3' miRNA: 3'- gcACGgAGCUGGGGCGU-CCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 36918 | 0.72 | 0.313482 |
Target: 5'- uCGUcGCCUCucuGGCUCCaGCGGGCCGCgGUu -3' miRNA: 3'- -GCA-CGGAG---CUGGGG-CGUCCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 6213 | 0.74 | 0.239956 |
Target: 5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3' miRNA: 3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 125240 | 0.74 | 0.239956 |
Target: 5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3' miRNA: 3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 61064 | 0.74 | 0.239956 |
Target: 5'- --cGUCUCGGCUCCGUucaGGGCCGCCa- -3' miRNA: 3'- gcaCGGAGCUGGGGCG---UCCGGUGGcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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