miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 128722 0.7 0.427588
Target:  5'- uCGcGCCUCGACgCUGUuucGGCCGCUGa -3'
miRNA:   3'- -GCaCGGAGCUGgGGCGu--CCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 85064 0.69 0.43603
Target:  5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3'
miRNA:   3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 35814 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 154840 0.69 0.43603
Target:  5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3'
miRNA:   3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5'
24741 3' -62.9 NC_005264.1 + 144776 0.69 0.444568
Target:  5'- -aUGCCcgCGcGCCCuggcuCGCGGcGCCGCCGCu -3'
miRNA:   3'- gcACGGa-GC-UGGG-----GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 134499 0.69 0.444568
Target:  5'- gCGUGUCgccCGcuaCCCGUAcGCCGCCGCa -3'
miRNA:   3'- -GCACGGa--GCug-GGGCGUcCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 149372 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 30345 0.69 0.452331
Target:  5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3'
miRNA:   3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 41361 0.69 0.453198
Target:  5'- aGUGCCgccgcgaaaaCGGCCUcucuaauguacgCGUAGGCCGCgCGCu -3'
miRNA:   3'- gCACGGa---------GCUGGG------------GCGUCCGGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 92179 0.69 0.461919
Target:  5'- -cUGCCggCGGCgCCGC-GGCCACgGUg -3'
miRNA:   3'- gcACGGa-GCUGgGGCGuCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 102844 0.69 0.470727
Target:  5'- gCG-GCCacgCGGCCgucUCGCucgcGGCCACCGCc -3'
miRNA:   3'- -GCaCGGa--GCUGG---GGCGu---CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 132801 0.69 0.470727
Target:  5'- aCGUGCCguacgCGAUCCUuCAGGUCucaCGCg -3'
miRNA:   3'- -GCACGGa----GCUGGGGcGUCCGGug-GCG- -5'
24741 3' -62.9 NC_005264.1 + 122786 0.68 0.488594
Target:  5'- --gGCCcgCGACCUCGaaaccagaguguUAGcGCCACCGCa -3'
miRNA:   3'- gcaCGGa-GCUGGGGC------------GUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 157952 0.68 0.497646
Target:  5'- gCGUgGCCUCGaACUCCGCGuGUCgcuuGCCGCc -3'
miRNA:   3'- -GCA-CGGAGC-UGGGGCGUcCGG----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 130271 0.68 0.497646
Target:  5'- gGUGCg-CGACgUUGCGgcGGCUACCGCg -3'
miRNA:   3'- gCACGgaGCUGgGGCGU--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 58257 0.68 0.497646
Target:  5'- uCG-GCC-CGAUCCCGUGGGCgGCaugGCg -3'
miRNA:   3'- -GCaCGGaGCUGGGGCGUCCGgUGg--CG- -5'
24741 3' -62.9 NC_005264.1 + 158741 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39715 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 40820 0.68 0.506773
Target:  5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3'
miRNA:   3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114903 0.68 0.515048
Target:  5'- uCGUGCCgagccguucuccgUCGauaagGCUCCGCGGGCaCACgUGCg -3'
miRNA:   3'- -GCACGG-------------AGC-----UGGGGCGUCCG-GUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.