miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 98086 0.68 0.543945
Target:  5'- uGUGCCcCGgccGCCCCG-GGGUUACCGg -3'
miRNA:   3'- gCACGGaGC---UGGGGCgUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 67008 0.68 0.544886
Target:  5'- aGUGCUgccuggacggagcggCGGCCUugCGCAGGCCcCCGa -3'
miRNA:   3'- gCACGGa--------------GCUGGG--GCGUCCGGuGGCg -5'
24741 3' -62.9 NC_005264.1 + 32537 0.67 0.553382
Target:  5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3'
miRNA:   3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 153021 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 124026 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 4999 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 33994 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62743 0.67 0.561917
Target:  5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3'
miRNA:   3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 158560 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39474 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 158501 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39533 0.67 0.562867
Target:  5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3'
miRNA:   3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69054 0.67 0.562867
Target:  5'- --gGCCgCGGCCgCCggGCAGGUCAUCGUc -3'
miRNA:   3'- gcaCGGaGCUGG-GG--CGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 51795 0.67 0.572396
Target:  5'- uCGU-CCggCGAgUCCGCGcGaGCCACCGCu -3'
miRNA:   3'- -GCAcGGa-GCUgGGGCGU-C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 82494 0.67 0.572396
Target:  5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3'
miRNA:   3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 93014 0.67 0.572396
Target:  5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3'
miRNA:   3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 113457 0.67 0.572396
Target:  5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3'
miRNA:   3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 127033 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 8006 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.