Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 152751 | 0.68 | 0.525235 |
Target: 5'- aCG-GCCgCGAugcCCCCgGCGGGagauuCCGCCGCg -3' miRNA: 3'- -GCaCGGaGCU---GGGG-CGUCC-----GGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114471 | 0.68 | 0.525235 |
Target: 5'- --cGCCUCGACgCgGCacugcgcaacgAGGCCGCCa- -3' miRNA: 3'- gcaCGGAGCUGgGgCG-----------UCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 77172 | 0.68 | 0.525235 |
Target: 5'- aCGaGCCacaacguucaugUCG-CgCUCGCGGGCCAUCGCg -3' miRNA: 3'- -GCaCGG------------AGCuG-GGGCGUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 39992 | 0.68 | 0.525235 |
Target: 5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3' miRNA: 3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 159019 | 0.68 | 0.525235 |
Target: 5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3' miRNA: 3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64289 | 0.68 | 0.525235 |
Target: 5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3' miRNA: 3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114434 | 0.68 | 0.515971 |
Target: 5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3' miRNA: 3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 9324 | 0.68 | 0.515971 |
Target: 5'- gGUuCCguUCGuCCCCGCcagGGGCgGCCGCc -3' miRNA: 3'- gCAcGG--AGCuGGGGCG---UCCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 48035 | 0.68 | 0.515048 |
Target: 5'- uGUGCCagaagcugUCGAggcauuuCCCCGCGGGgCUGCUGUu -3' miRNA: 3'- gCACGG--------AGCU-------GGGGCGUCC-GGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114903 | 0.68 | 0.515048 |
Target: 5'- uCGUGCCgagccguucuccgUCGauaagGCUCCGCGGGCaCACgUGCg -3' miRNA: 3'- -GCACGG-------------AGC-----UGGGGCGUCCG-GUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 115641 | 0.68 | 0.515048 |
Target: 5'- aCG-GCCgUGGCCCCGCucaucccAGGCUugACCGUc -3' miRNA: 3'- -GCaCGGaGCUGGGGCG-------UCCGG--UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 39715 | 0.68 | 0.506773 |
Target: 5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3' miRNA: 3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158741 | 0.68 | 0.506773 |
Target: 5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3' miRNA: 3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 40820 | 0.68 | 0.506773 |
Target: 5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3' miRNA: 3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 157952 | 0.68 | 0.497646 |
Target: 5'- gCGUgGCCUCGaACUCCGCGuGUCgcuuGCCGCc -3' miRNA: 3'- -GCA-CGGAGC-UGGGGCGUcCGG----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 58257 | 0.68 | 0.497646 |
Target: 5'- uCG-GCC-CGAUCCCGUGGGCgGCaugGCg -3' miRNA: 3'- -GCaCGGaGCUGGGGCGUCCGgUGg--CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 130271 | 0.68 | 0.497646 |
Target: 5'- gGUGCg-CGACgUUGCGgcGGCUACCGCg -3' miRNA: 3'- gCACGgaGCUGgGGCGU--CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122786 | 0.68 | 0.488594 |
Target: 5'- --gGCCcgCGACCUCGaaaccagaguguUAGcGCCACCGCa -3' miRNA: 3'- gcaCGGa-GCUGGGGC------------GUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 102844 | 0.69 | 0.470727 |
Target: 5'- gCG-GCCacgCGGCCgucUCGCucgcGGCCACCGCc -3' miRNA: 3'- -GCaCGGa--GCUGG---GGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 132801 | 0.69 | 0.470727 |
Target: 5'- aCGUGCCguacgCGAUCCUuCAGGUCucaCGCg -3' miRNA: 3'- -GCACGGa----GCUGGGGcGUCCGGug-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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