miRNA display CGI


Results 41 - 60 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 44133 0.67 0.598295
Target:  5'- --cGUCUCGcagcccuucucccaACaCCCGCAGGgCaACCGCg -3'
miRNA:   3'- gcaCGGAGC--------------UG-GGGCGUCCgG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 44775 0.71 0.372092
Target:  5'- gGUGCCcgcggcgaucguugcCGACgCCGC-GGUCGCCGCg -3'
miRNA:   3'- gCACGGa--------------GCUGgGGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 48035 0.68 0.515048
Target:  5'- uGUGCCagaagcugUCGAggcauuuCCCCGCGGGgCUGCUGUu -3'
miRNA:   3'- gCACGG--------AGCU-------GGGGCGUCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 48930 0.71 0.379048
Target:  5'- --aGUCUCG-CCCgaugggcacuugUGCGGGCCGCUGCg -3'
miRNA:   3'- gcaCGGAGCuGGG------------GCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 51795 0.67 0.572396
Target:  5'- uCGU-CCggCGAgUCCGCGcGaGCCACCGCu -3'
miRNA:   3'- -GCAcGGa-GCUgGGGCGU-C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 54233 0.71 0.341519
Target:  5'- uGUGUCgaggCGGCCCCGCGcGCCAaCGUg -3'
miRNA:   3'- gCACGGa---GCUGGGGCGUcCGGUgGCG- -5'
24741 3' -62.9 NC_005264.1 + 55893 0.79 0.103585
Target:  5'- --gGCCUCaGAUCCUGC-GGCCGCCGCa -3'
miRNA:   3'- gcaCGGAG-CUGGGGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 57967 0.72 0.313482
Target:  5'- uGUGCCuaucgucaUCGGaguCCCCGCGcGGCgGCCGUg -3'
miRNA:   3'- gCACGG--------AGCU---GGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 58257 0.68 0.497646
Target:  5'- uCG-GCC-CGAUCCCGUGGGCgGCaugGCg -3'
miRNA:   3'- -GCaCGGaGCUGGGGCGUCCGgUGg--CG- -5'
24741 3' -62.9 NC_005264.1 + 61064 0.74 0.239956
Target:  5'- --cGUCUCGGCUCCGUucaGGGCCGCCa- -3'
miRNA:   3'- gcaCGGAGCUGGGGCG---UCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 61486 0.67 0.581962
Target:  5'- gCGcGCCgacgCG-CCCCGCGgucucGGCUagcGCCGCg -3'
miRNA:   3'- -GCaCGGa---GCuGGGGCGU-----CCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62350 0.66 0.62049
Target:  5'- --cGCC-CGcaACCCCuccaggGCccuGGCCGCCGCg -3'
miRNA:   3'- gcaCGGaGC--UGGGG------CGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62743 0.67 0.561917
Target:  5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3'
miRNA:   3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 62917 0.67 0.601185
Target:  5'- --aGCUUa-GCCgCGCGGGCUugCGCg -3'
miRNA:   3'- gcaCGGAgcUGGgGCGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 63446 0.67 0.601185
Target:  5'- -uUGCCUgGcauACCCCGCuccGCCGuuGCg -3'
miRNA:   3'- gcACGGAgC---UGGGGCGuc-CGGUggCG- -5'
24741 3' -62.9 NC_005264.1 + 64289 0.68 0.525235
Target:  5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3'
miRNA:   3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 64504 0.7 0.427588
Target:  5'- aGUcGCCUgGACCgCGCuGuucuguccgcGCCGCCGCg -3'
miRNA:   3'- gCA-CGGAgCUGGgGCGuC----------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 65412 0.67 0.591561
Target:  5'- --cGCggCGGCgCCCGCAGcGCuCACUGCc -3'
miRNA:   3'- gcaCGgaGCUG-GGGCGUC-CG-GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 65448 0.66 0.630157
Target:  5'- --cGUUUUGACUCUGCAcGGCCugCGg -3'
miRNA:   3'- gcaCGGAGCUGGGGCGU-CCGGugGCg -5'
24741 3' -62.9 NC_005264.1 + 65583 0.71 0.371324
Target:  5'- cCGUGCCaaGGCCCgGC-GGCCACaucuuGCu -3'
miRNA:   3'- -GCACGGagCUGGGgCGuCCGGUGg----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.