miRNA display CGI


Results 61 - 80 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 67008 0.68 0.544886
Target:  5'- aGUGCUgccuggacggagcggCGGCCUugCGCAGGCCcCCGa -3'
miRNA:   3'- gCACGGa--------------GCUGGG--GCGUCCGGuGGCg -5'
24741 3' -62.9 NC_005264.1 + 67463 0.66 0.639826
Target:  5'- gCG-GCCagcUCGugaaaCCCGaggcCGGGCCGCCGCc -3'
miRNA:   3'- -GCaCGG---AGCug---GGGC----GUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 68251 0.66 0.639826
Target:  5'- -aUGCC-CG-CgCCGCGGGCgGCCuGCu -3'
miRNA:   3'- gcACGGaGCuGgGGCGUCCGgUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 69000 0.66 0.61083
Target:  5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3'
miRNA:   3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69054 0.67 0.562867
Target:  5'- --gGCCgCGGCCgCCggGCAGGUCAUCGUc -3'
miRNA:   3'- gcaCGGaGCUGG-GG--CGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69834 0.71 0.356203
Target:  5'- -cUGCCUUGAcugcCCCCGCuacGGCCgguGCUGCg -3'
miRNA:   3'- gcACGGAGCU----GGGGCGu--CCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 71603 0.67 0.581962
Target:  5'- --gGCCUgGAUagagcuaCGCGGGCUAUCGCg -3'
miRNA:   3'- gcaCGGAgCUGgg-----GCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 71733 0.7 0.419243
Target:  5'- --aGCCagGACUCCGCGacaGCCAUCGCg -3'
miRNA:   3'- gcaCGGagCUGGGGCGUc--CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 75219 0.72 0.320324
Target:  5'- -cUGCaUCGGCCCUGCGcGGCgGCCGUc -3'
miRNA:   3'- gcACGgAGCUGGGGCGU-CCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 75226 0.66 0.64949
Target:  5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3'
miRNA:   3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 75900 0.67 0.601185
Target:  5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3'
miRNA:   3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 76954 0.66 0.630157
Target:  5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3'
miRNA:   3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5'
24741 3' -62.9 NC_005264.1 + 77172 0.68 0.525235
Target:  5'- aCGaGCCacaacguucaugUCG-CgCUCGCGGGCCAUCGCg -3'
miRNA:   3'- -GCaCGG------------AGCuG-GGGCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 79727 0.67 0.591561
Target:  5'- gCG-GCCUUGGCgCCCGUcGGCguaCACCuGCg -3'
miRNA:   3'- -GCaCGGAGCUG-GGGCGuCCG---GUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 82494 0.67 0.572396
Target:  5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3'
miRNA:   3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 83402 0.68 0.543945
Target:  5'- -cUGCCcccggaGACCCCGCaccgcccacgcuGGGuuCCGCCGCg -3'
miRNA:   3'- gcACGGag----CUGGGGCG------------UCC--GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 85064 0.69 0.43603
Target:  5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3'
miRNA:   3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 85917 0.66 0.62049
Target:  5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3'
miRNA:   3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 86202 0.66 0.662996
Target:  5'- uCG-GCCUCGAUggucuucucugcgugCUCGUGGGCgGCCGa -3'
miRNA:   3'- -GCaCGGAGCUG---------------GGGCGUCCGgUGGCg -5'
24741 3' -62.9 NC_005264.1 + 86767 0.68 0.534561
Target:  5'- --aGCCgUCGACgCUCGCGGcGUCGCgGCg -3'
miRNA:   3'- gcaCGG-AGCUG-GGGCGUC-CGGUGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.