miRNA display CGI


Results 81 - 100 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 87119 0.68 0.534561
Target:  5'- --gGCCUcCGGCgCCCGCGGGgCgCACCa- -3'
miRNA:   3'- gcaCGGA-GCUG-GGGCGUCC-G-GUGGcg -5'
24741 3' -62.9 NC_005264.1 + 87714 0.66 0.64949
Target:  5'- -aUGCCgaGGCCuuGguGGCUuucaucGCCGCa -3'
miRNA:   3'- gcACGGagCUGGggCguCCGG------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90973 0.66 0.64949
Target:  5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3'
miRNA:   3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 91008 0.71 0.348806
Target:  5'- aCGcGUCguuauucgCGACCCCGCGGGCggcuucgGCCGCu -3'
miRNA:   3'- -GCaCGGa-------GCUGGGGCGUCCGg------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 92179 0.69 0.461919
Target:  5'- -cUGCCggCGGCgCCGC-GGCCACgGUg -3'
miRNA:   3'- gcACGGa-GCUGgGGCGuCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 93014 0.67 0.572396
Target:  5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3'
miRNA:   3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 95812 0.67 0.572396
Target:  5'- --cGUCgggGGCCUgCGCaAGGCCGCCGCu -3'
miRNA:   3'- gcaCGGag-CUGGG-GCG-UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 97370 0.75 0.218856
Target:  5'- gCGUGCaugCGAgCUCGCAGGCCcgcagGCCGUg -3'
miRNA:   3'- -GCACGga-GCUgGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 98086 0.68 0.543945
Target:  5'- uGUGCCcCGgccGCCCCG-GGGUUACCGg -3'
miRNA:   3'- gCACGGaGC---UGGGGCgUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 99194 0.67 0.601185
Target:  5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3'
miRNA:   3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 101397 0.66 0.630157
Target:  5'- --aGCaaCUCGGCgCCgaggaGCGGGCCGCCGa -3'
miRNA:   3'- gcaCG--GAGCUGgGG-----CGUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 102844 0.69 0.470727
Target:  5'- gCG-GCCacgCGGCCgucUCGCucgcGGCCACCGCc -3'
miRNA:   3'- -GCaCGGa--GCUGG---GGCGu---CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 106010 0.67 0.581962
Target:  5'- --aGCCaCGAgCCgcuaGCuaGGGCCGCCGCg -3'
miRNA:   3'- gcaCGGaGCUgGGg---CG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 109948 0.66 0.639826
Target:  5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3'
miRNA:   3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 113457 0.67 0.572396
Target:  5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3'
miRNA:   3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 114134 0.66 0.62049
Target:  5'- --cGCCUCaucUCCCGCGaGCgACCGCg -3'
miRNA:   3'- gcaCGGAGcu-GGGGCGUcCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114434 0.68 0.515971
Target:  5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3'
miRNA:   3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114471 0.68 0.525235
Target:  5'- --cGCCUCGACgCgGCacugcgcaacgAGGCCGCCa- -3'
miRNA:   3'- gcaCGGAGCUGgGgCG-----------UCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 114747 0.67 0.581962
Target:  5'- gCGUGCa--GAaCCCGCGcGGCCGCgGUa -3'
miRNA:   3'- -GCACGgagCUgGGGCGU-CCGGUGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.