miRNA display CGI


Results 101 - 120 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 114903 0.68 0.515048
Target:  5'- uCGUGCCgagccguucuccgUCGauaagGCUCCGCGGGCaCACgUGCg -3'
miRNA:   3'- -GCACGG-------------AGC-----UGGGGCGUCCG-GUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 115641 0.68 0.515048
Target:  5'- aCG-GCCgUGGCCCCGCucaucccAGGCUugACCGUc -3'
miRNA:   3'- -GCaCGGaGCUGGGGCG-------UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 116238 0.72 0.30013
Target:  5'- cCGU-CCUCG-CCCCGCAGGgacagagccuCCGCaCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGGGCGUCC----------GGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 117176 0.66 0.61083
Target:  5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3'
miRNA:   3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 119263 0.66 0.61083
Target:  5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3'
miRNA:   3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5'
24741 3' -62.9 NC_005264.1 + 119922 0.71 0.363709
Target:  5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3'
miRNA:   3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 121190 0.66 0.639826
Target:  5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3'
miRNA:   3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 121511 0.66 0.659141
Target:  5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3'
miRNA:   3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 122032 0.66 0.659141
Target:  5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3'
miRNA:   3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 122786 0.68 0.488594
Target:  5'- --gGCCcgCGACCUCGaaaccagaguguUAGcGCCACCGCa -3'
miRNA:   3'- gcaCGGa-GCUGGGGC------------GUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 122789 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 124026 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 125240 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 126330 0.66 0.64949
Target:  5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3'
miRNA:   3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 127033 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 128722 0.7 0.427588
Target:  5'- uCGcGCCUCGACgCUGUuucGGCCGCUGa -3'
miRNA:   3'- -GCaCGGAGCUGgGGCGu--CCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 130018 0.68 0.543945
Target:  5'- --aGaCCggaaCGGCgCCGCAGGCUuCCGCg -3'
miRNA:   3'- gcaC-GGa---GCUGgGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 130271 0.68 0.497646
Target:  5'- gGUGCg-CGACgUUGCGgcGGCUACCGCg -3'
miRNA:   3'- gCACGgaGCUGgGGCGU--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 131648 0.66 0.62049
Target:  5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3'
miRNA:   3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.