miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 144391 0.74 0.234526
Target:  5'- aCGUGCUccuacacguccuUCGACCCCGCgccgagcgagaGGGCgCGCCuGCg -3'
miRNA:   3'- -GCACGG------------AGCUGGGGCG-----------UCCG-GUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 143732 0.7 0.410999
Target:  5'- aGUG-CUCGuCUCCGC--GCCGCCGCg -3'
miRNA:   3'- gCACgGAGCuGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 139806 0.7 0.386878
Target:  5'- gCGUGCCgUCGGCCgUCGCGGGaCGaaaCGCg -3'
miRNA:   3'- -GCACGG-AGCUGG-GGCGUCCgGUg--GCG- -5'
24741 3' -62.9 NC_005264.1 + 139500 0.75 0.21087
Target:  5'- --cGCCUCggggcaGACCCCGCuGGCCgcgauguuguggcccGCCGCa -3'
miRNA:   3'- gcaCGGAG------CUGGGGCGuCCGG---------------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 137610 0.68 0.532691
Target:  5'- --cGCCUCaACUCUGCcggcacugcccuGGCCACCGUg -3'
miRNA:   3'- gcaCGGAGcUGGGGCGu-----------CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 134513 0.7 0.386878
Target:  5'- uCGUGCCgauacCGACUagaCGUAGGCgCGCgGCa -3'
miRNA:   3'- -GCACGGa----GCUGGg--GCGUCCG-GUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 134499 0.69 0.444568
Target:  5'- gCGUGUCgccCGcuaCCCGUAcGCCGCCGCa -3'
miRNA:   3'- -GCACGGa--GCug-GGGCGUcCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 133207 0.71 0.379048
Target:  5'- -cUGCCUgGAcgaccucuuuaCCCCGUGcGCCGCCGCg -3'
miRNA:   3'- gcACGGAgCU-----------GGGGCGUcCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 132801 0.69 0.470727
Target:  5'- aCGUGCCguacgCGAUCCUuCAGGUCucaCGCg -3'
miRNA:   3'- -GCACGGa----GCUGGGGcGUCCGGug-GCG- -5'
24741 3' -62.9 NC_005264.1 + 132268 0.72 0.332212
Target:  5'- gCGUGuCCUcuccugCGACCCCGCcGGUagaagugaucgcgaCACCGCg -3'
miRNA:   3'- -GCAC-GGA------GCUGGGGCGuCCG--------------GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 131648 0.66 0.62049
Target:  5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3'
miRNA:   3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 130271 0.68 0.497646
Target:  5'- gGUGCg-CGACgUUGCGgcGGCUACCGCg -3'
miRNA:   3'- gCACGgaGCUGgGGCGU--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 130018 0.68 0.543945
Target:  5'- --aGaCCggaaCGGCgCCGCAGGCUuCCGCg -3'
miRNA:   3'- gcaC-GGa---GCUGgGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128722 0.7 0.427588
Target:  5'- uCGcGCCUCGACgCUGUuucGGCCGCUGa -3'
miRNA:   3'- -GCaCGGAGCUGgGGCGu--CCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 127033 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 126330 0.66 0.64949
Target:  5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3'
miRNA:   3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 125240 0.74 0.239956
Target:  5'- gCGUcCUUUGAccCCCCGCcgcGGCCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCU--GGGGCGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 124026 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 122789 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.