Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 122786 | 0.68 | 0.488594 |
Target: 5'- --gGCCcgCGACCUCGaaaccagaguguUAGcGCCACCGCa -3' miRNA: 3'- gcaCGGa-GCUGGGGC------------GUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122032 | 0.66 | 0.659141 |
Target: 5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3' miRNA: 3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 121511 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 121190 | 0.66 | 0.639826 |
Target: 5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3' miRNA: 3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 119922 | 0.71 | 0.363709 |
Target: 5'- gGUGUa-CGGCCCCGUgucgcGGGCCGCUGg -3' miRNA: 3'- gCACGgaGCUGGGGCG-----UCCGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 119263 | 0.66 | 0.61083 |
Target: 5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3' miRNA: 3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 117176 | 0.66 | 0.61083 |
Target: 5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3' miRNA: 3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 116238 | 0.72 | 0.30013 |
Target: 5'- cCGU-CCUCG-CCCCGCAGGgacagagccuCCGCaCGCg -3' miRNA: 3'- -GCAcGGAGCuGGGGCGUCC----------GGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 115641 | 0.68 | 0.515048 |
Target: 5'- aCG-GCCgUGGCCCCGCucaucccAGGCUugACCGUc -3' miRNA: 3'- -GCaCGGaGCUGGGGCG-------UCCGG--UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114903 | 0.68 | 0.515048 |
Target: 5'- uCGUGCCgagccguucuccgUCGauaagGCUCCGCGGGCaCACgUGCg -3' miRNA: 3'- -GCACGG-------------AGC-----UGGGGCGUCCG-GUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114747 | 0.67 | 0.581962 |
Target: 5'- gCGUGCa--GAaCCCGCGcGGCCGCgGUa -3' miRNA: 3'- -GCACGgagCUgGGGCGU-CCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114471 | 0.68 | 0.525235 |
Target: 5'- --cGCCUCGACgCgGCacugcgcaacgAGGCCGCCa- -3' miRNA: 3'- gcaCGGAGCUGgGgCG-----------UCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114434 | 0.68 | 0.515971 |
Target: 5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3' miRNA: 3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114134 | 0.66 | 0.62049 |
Target: 5'- --cGCCUCaucUCCCGCGaGCgACCGCg -3' miRNA: 3'- gcaCGGAGcu-GGGGCGUcCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 113457 | 0.67 | 0.572396 |
Target: 5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3' miRNA: 3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 109948 | 0.66 | 0.639826 |
Target: 5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3' miRNA: 3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 106010 | 0.67 | 0.581962 |
Target: 5'- --aGCCaCGAgCCgcuaGCuaGGGCCGCCGCg -3' miRNA: 3'- gcaCGGaGCUgGGg---CG--UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 102844 | 0.69 | 0.470727 |
Target: 5'- gCG-GCCacgCGGCCgucUCGCucgcGGCCACCGCc -3' miRNA: 3'- -GCaCGGa--GCUGG---GGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 101397 | 0.66 | 0.630157 |
Target: 5'- --aGCaaCUCGGCgCCgaggaGCGGGCCGCCGa -3' miRNA: 3'- gcaCG--GAGCUGgGG-----CGUCCGGUGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 99194 | 0.67 | 0.601185 |
Target: 5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3' miRNA: 3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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