miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 98086 0.68 0.543945
Target:  5'- uGUGCCcCGgccGCCCCG-GGGUUACCGg -3'
miRNA:   3'- gCACGGaGC---UGGGGCgUCCGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 97370 0.75 0.218856
Target:  5'- gCGUGCaugCGAgCUCGCAGGCCcgcagGCCGUg -3'
miRNA:   3'- -GCACGga-GCUgGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 95812 0.67 0.572396
Target:  5'- --cGUCgggGGCCUgCGCaAGGCCGCCGCu -3'
miRNA:   3'- gcaCGGag-CUGGG-GCG-UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 93014 0.67 0.572396
Target:  5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3'
miRNA:   3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5'
24741 3' -62.9 NC_005264.1 + 92179 0.69 0.461919
Target:  5'- -cUGCCggCGGCgCCGC-GGCCACgGUg -3'
miRNA:   3'- gcACGGa-GCUGgGGCGuCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 91008 0.71 0.348806
Target:  5'- aCGcGUCguuauucgCGACCCCGCGGGCggcuucgGCCGCu -3'
miRNA:   3'- -GCaCGGa-------GCUGGGGCGUCCGg------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90973 0.66 0.64949
Target:  5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3'
miRNA:   3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 90511 0.67 0.562867
Target:  5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3'
miRNA:   3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 87714 0.66 0.64949
Target:  5'- -aUGCCgaGGCCuuGguGGCUuucaucGCCGCa -3'
miRNA:   3'- gcACGGagCUGGggCguCCGG------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 87119 0.68 0.534561
Target:  5'- --gGCCUcCGGCgCCCGCGGGgCgCACCa- -3'
miRNA:   3'- gcaCGGA-GCUG-GGGCGUCC-G-GUGGcg -5'
24741 3' -62.9 NC_005264.1 + 86767 0.68 0.534561
Target:  5'- --aGCCgUCGACgCUCGCGGcGUCGCgGCg -3'
miRNA:   3'- gcaCGG-AGCUG-GGGCGUC-CGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 86202 0.66 0.662996
Target:  5'- uCG-GCCUCGAUggucuucucugcgugCUCGUGGGCgGCCGa -3'
miRNA:   3'- -GCaCGGAGCUG---------------GGGCGUCCGgUGGCg -5'
24741 3' -62.9 NC_005264.1 + 85917 0.66 0.62049
Target:  5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3'
miRNA:   3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 85064 0.69 0.43603
Target:  5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3'
miRNA:   3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 83402 0.68 0.543945
Target:  5'- -cUGCCcccggaGACCCCGCaccgcccacgcuGGGuuCCGCCGCg -3'
miRNA:   3'- gcACGGag----CUGGGGCG------------UCC--GGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 82494 0.67 0.572396
Target:  5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3'
miRNA:   3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 79727 0.67 0.591561
Target:  5'- gCG-GCCUUGGCgCCCGUcGGCguaCACCuGCg -3'
miRNA:   3'- -GCaCGGAGCUG-GGGCGuCCG---GUGG-CG- -5'
24741 3' -62.9 NC_005264.1 + 77172 0.68 0.525235
Target:  5'- aCGaGCCacaacguucaugUCG-CgCUCGCGGGCCAUCGCg -3'
miRNA:   3'- -GCaCGG------------AGCuG-GGGCGUCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 76954 0.66 0.630157
Target:  5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3'
miRNA:   3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5'
24741 3' -62.9 NC_005264.1 + 75900 0.67 0.601185
Target:  5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3'
miRNA:   3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.