Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 75226 | 0.66 | 0.64949 |
Target: 5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3' miRNA: 3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75219 | 0.72 | 0.320324 |
Target: 5'- -cUGCaUCGGCCCUGCGcGGCgGCCGUc -3' miRNA: 3'- gcACGgAGCUGGGGCGU-CCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 71733 | 0.7 | 0.419243 |
Target: 5'- --aGCCagGACUCCGCGacaGCCAUCGCg -3' miRNA: 3'- gcaCGGagCUGGGGCGUc--CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 71603 | 0.67 | 0.581962 |
Target: 5'- --gGCCUgGAUagagcuaCGCGGGCUAUCGCg -3' miRNA: 3'- gcaCGGAgCUGgg-----GCGUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69834 | 0.71 | 0.356203 |
Target: 5'- -cUGCCUUGAcugcCCCCGCuacGGCCgguGCUGCg -3' miRNA: 3'- gcACGGAGCU----GGGGCGu--CCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69054 | 0.67 | 0.562867 |
Target: 5'- --gGCCgCGGCCgCCggGCAGGUCAUCGUc -3' miRNA: 3'- gcaCGGaGCUGG-GG--CGUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69000 | 0.66 | 0.61083 |
Target: 5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3' miRNA: 3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 68251 | 0.66 | 0.639826 |
Target: 5'- -aUGCC-CG-CgCCGCGGGCgGCCuGCu -3' miRNA: 3'- gcACGGaGCuGgGGCGUCCGgUGG-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 67463 | 0.66 | 0.639826 |
Target: 5'- gCG-GCCagcUCGugaaaCCCGaggcCGGGCCGCCGCc -3' miRNA: 3'- -GCaCGG---AGCug---GGGC----GUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 67008 | 0.68 | 0.544886 |
Target: 5'- aGUGCUgccuggacggagcggCGGCCUugCGCAGGCCcCCGa -3' miRNA: 3'- gCACGGa--------------GCUGGG--GCGUCCGGuGGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65583 | 0.71 | 0.371324 |
Target: 5'- cCGUGCCaaGGCCCgGC-GGCCACaucuuGCu -3' miRNA: 3'- -GCACGGagCUGGGgCGuCCGGUGg----CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65448 | 0.66 | 0.630157 |
Target: 5'- --cGUUUUGACUCUGCAcGGCCugCGg -3' miRNA: 3'- gcaCGGAGCUGGGGCGU-CCGGugGCg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 65412 | 0.67 | 0.591561 |
Target: 5'- --cGCggCGGCgCCCGCAGcGCuCACUGCc -3' miRNA: 3'- gcaCGgaGCUG-GGGCGUC-CG-GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64504 | 0.7 | 0.427588 |
Target: 5'- aGUcGCCUgGACCgCGCuGuucuguccgcGCCGCCGCg -3' miRNA: 3'- gCA-CGGAgCUGGgGCGuC----------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64289 | 0.68 | 0.525235 |
Target: 5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3' miRNA: 3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 63446 | 0.67 | 0.601185 |
Target: 5'- -uUGCCUgGcauACCCCGCuccGCCGuuGCg -3' miRNA: 3'- gcACGGAgC---UGGGGCGuc-CGGUggCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62917 | 0.67 | 0.601185 |
Target: 5'- --aGCUUa-GCCgCGCGGGCUugCGCg -3' miRNA: 3'- gcaCGGAgcUGGgGCGUCCGGugGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62743 | 0.67 | 0.561917 |
Target: 5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3' miRNA: 3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62350 | 0.66 | 0.62049 |
Target: 5'- --cGCC-CGcaACCCCuccaggGCccuGGCCGCCGCg -3' miRNA: 3'- gcaCGGaGC--UGGGG------CGu--CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 61486 | 0.67 | 0.581962 |
Target: 5'- gCGcGCCgacgCG-CCCCGCGgucucGGCUagcGCCGCg -3' miRNA: 3'- -GCaCGGa---GCuGGGGCGU-----CCGG---UGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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