Results 61 - 80 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 13591 | 0.68 | 0.533625 |
Target: 5'- --gGCUUCGGCCCCaGCGccacaccGGCCagcgacagugACCGCu -3' miRNA: 3'- gcaCGGAGCUGGGG-CGU-------CCGG----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 137610 | 0.68 | 0.532691 |
Target: 5'- --cGCCUCaACUCUGCcggcacugcccuGGCCACCGUg -3' miRNA: 3'- gcaCGGAGcUGGGGCGu-----------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 159019 | 0.68 | 0.525235 |
Target: 5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3' miRNA: 3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64289 | 0.68 | 0.525235 |
Target: 5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3' miRNA: 3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114434 | 0.68 | 0.515971 |
Target: 5'- -aUGCCcCca-CCCGCuccuGGCCGCCGCc -3' miRNA: 3'- gcACGGaGcugGGGCGu---CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 85064 | 0.69 | 0.43603 |
Target: 5'- --gGCCU--GCCCCGUuccccAGGuCCGCCGCa -3' miRNA: 3'- gcaCGGAgcUGGGGCG-----UCC-GGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 154840 | 0.69 | 0.43603 |
Target: 5'- --cGCCUcugcCGGCCCCGCAauGGCgGCCcguGCa -3' miRNA: 3'- gcaCGGA----GCUGGGGCGU--CCGgUGG---CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 149372 | 0.69 | 0.452331 |
Target: 5'- uGUcCCcCGAguCCCCGCAGgagccccuucggcGCCGCCGCg -3' miRNA: 3'- gCAcGGaGCU--GGGGCGUC-------------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 41361 | 0.69 | 0.453198 |
Target: 5'- aGUGCCgccgcgaaaaCGGCCUcucuaauguacgCGUAGGCCGCgCGCu -3' miRNA: 3'- gCACGGa---------GCUGGG------------GCGUCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 40820 | 0.68 | 0.506773 |
Target: 5'- gGUcGCCgagacucaaGAUCCCGCuauGGCCgGCCGCc -3' miRNA: 3'- gCA-CGGag-------CUGGGGCGu--CCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158741 | 0.68 | 0.506773 |
Target: 5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3' miRNA: 3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 9324 | 0.68 | 0.515971 |
Target: 5'- gGUuCCguUCGuCCCCGCcagGGGCgGCCGCc -3' miRNA: 3'- gCAcGG--AGCuGGGGCG---UCCGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 14183 | 0.66 | 0.643692 |
Target: 5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3' miRNA: 3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75226 | 0.66 | 0.64949 |
Target: 5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3' miRNA: 3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 126330 | 0.66 | 0.64949 |
Target: 5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3' miRNA: 3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90973 | 0.66 | 0.64949 |
Target: 5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3' miRNA: 3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122032 | 0.66 | 0.659141 |
Target: 5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3' miRNA: 3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 146769 | 0.66 | 0.659141 |
Target: 5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3' miRNA: 3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 2484 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42763 | 0.76 | 0.168476 |
Target: 5'- aCGUGCCgagCGACCCgGguGGCCaguuacgGCCGg -3' miRNA: 3'- -GCACGGa--GCUGGGgCguCCGG-------UGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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