Results 81 - 100 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 25135 | 0.67 | 0.581962 |
Target: 5'- cCGUGUCUCGGCCgaGUAGuUgGCCGUg -3' miRNA: 3'- -GCACGGAGCUGGggCGUCcGgUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 93014 | 0.67 | 0.572396 |
Target: 5'- gCG-GCCUUcACCCCgGCGGcGUCGuCCGCg -3' miRNA: 3'- -GCaCGGAGcUGGGG-CGUC-CGGU-GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 82494 | 0.67 | 0.572396 |
Target: 5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3' miRNA: 3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 51795 | 0.67 | 0.572396 |
Target: 5'- uCGU-CCggCGAgUCCGCGcGaGCCACCGCu -3' miRNA: 3'- -GCAcGGa-GCUgGGGCGU-C-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 95812 | 0.67 | 0.572396 |
Target: 5'- --cGUCgggGGCCUgCGCaAGGCCGCCGCu -3' miRNA: 3'- gcaCGGag-CUGGG-GCG-UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 3763 | 0.66 | 0.61083 |
Target: 5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3' miRNA: 3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 128207 | 0.66 | 0.61083 |
Target: 5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3' miRNA: 3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 131648 | 0.66 | 0.62049 |
Target: 5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3' miRNA: 3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 2484 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 146769 | 0.66 | 0.659141 |
Target: 5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3' miRNA: 3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122032 | 0.66 | 0.659141 |
Target: 5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3' miRNA: 3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90973 | 0.66 | 0.64949 |
Target: 5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3' miRNA: 3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 126330 | 0.66 | 0.64949 |
Target: 5'- --cGCC-CG-CCUCGUcgAGGCCGCgCGCu -3' miRNA: 3'- gcaCGGaGCuGGGGCG--UCCGGUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 75226 | 0.66 | 0.64949 |
Target: 5'- -uUGCCUCuGGCgCgGcCAGGUCGuCCGCg -3' miRNA: 3'- gcACGGAG-CUGgGgC-GUCCGGU-GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 14183 | 0.66 | 0.643692 |
Target: 5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3' miRNA: 3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 121190 | 0.66 | 0.639826 |
Target: 5'- aCGU-CCUUaGACCCgGCcGcGCUGCCGCa -3' miRNA: 3'- -GCAcGGAG-CUGGGgCGuC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 109948 | 0.66 | 0.639826 |
Target: 5'- --cGCCgaccuuaCGGCCCUGCugauGGCaggUACCGCg -3' miRNA: 3'- gcaCGGa------GCUGGGGCGu---CCG---GUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 145165 | 0.66 | 0.638859 |
Target: 5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3' miRNA: 3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 76954 | 0.66 | 0.630157 |
Target: 5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3' miRNA: 3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 101397 | 0.66 | 0.630157 |
Target: 5'- --aGCaaCUCGGCgCCgaggaGCGGGCCGCCGa -3' miRNA: 3'- gcaCG--GAGCUGgGG-----CGUCCGGUGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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