miRNA display CGI


Results 21 - 40 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 151780 0.67 0.591561
Target:  5'- gCGgGUaCUUG-CCCCGcCAGGCC-CCGCc -3'
miRNA:   3'- -GCaCG-GAGCuGGGGC-GUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 99194 0.67 0.601185
Target:  5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3'
miRNA:   3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 145165 0.66 0.638859
Target:  5'- gCG-GCCUCGGCUgCGCcugAGGCUACgauauacaauuggCGCg -3'
miRNA:   3'- -GCaCGGAGCUGGgGCG---UCCGGUG-------------GCG- -5'
24741 3' -62.9 NC_005264.1 + 122032 0.66 0.659141
Target:  5'- --aGUCUCggcGACCCCGCGgcaagcGGCUccgcucucggcGCCGCg -3'
miRNA:   3'- gcaCGGAG---CUGGGGCGU------CCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 4999 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 51795 0.67 0.572396
Target:  5'- uCGU-CCggCGAgUCCGCGcGaGCCACCGCu -3'
miRNA:   3'- -GCAcGGa-GCUgGGGCGU-C-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69000 0.66 0.61083
Target:  5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3'
miRNA:   3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 146769 0.66 0.659141
Target:  5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3'
miRNA:   3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 82494 0.67 0.572396
Target:  5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3'
miRNA:   3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 2484 0.66 0.659141
Target:  5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3'
miRNA:   3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 75900 0.67 0.601185
Target:  5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3'
miRNA:   3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 65412 0.67 0.591561
Target:  5'- --cGCggCGGCgCCCGCAGcGCuCACUGCc -3'
miRNA:   3'- gcaCGgaGCUG-GGGCGUC-CG-GUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 76954 0.66 0.630157
Target:  5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3'
miRNA:   3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5'
24741 3' -62.9 NC_005264.1 + 14183 0.66 0.643692
Target:  5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3'
miRNA:   3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5'
24741 3' -62.9 NC_005264.1 + 90973 0.66 0.64949
Target:  5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3'
miRNA:   3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114471 0.68 0.525235
Target:  5'- --cGCCUCGACgCgGCacugcgcaacgAGGCCGCCa- -3'
miRNA:   3'- gcaCGGAGCUGgGgCG-----------UCCGGUGGcg -5'
24741 3' -62.9 NC_005264.1 + 130018 0.68 0.543945
Target:  5'- --aGaCCggaaCGGCgCCGCAGGCUuCCGCg -3'
miRNA:   3'- gcaC-GGa---GCUGgGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39474 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 95812 0.67 0.572396
Target:  5'- --cGUCgggGGCCUgCGCaAGGCCGCCGCu -3'
miRNA:   3'- gcaCGGag-CUGGG-GCG-UCCGGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.