Results 41 - 60 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 33994 | 0.67 | 0.553382 |
Target: 5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3' miRNA: 3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69000 | 0.66 | 0.61083 |
Target: 5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3' miRNA: 3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 146769 | 0.66 | 0.659141 |
Target: 5'- aGUGCUcgcagUGugUUCGCAGGUCauauaGCCGCu -3' miRNA: 3'- gCACGGa----GCugGGGCGUCCGG-----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 69054 | 0.67 | 0.562867 |
Target: 5'- --gGCCgCGGCCgCCggGCAGGUCAUCGUc -3' miRNA: 3'- gcaCGGaGCUGG-GG--CGUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 2484 | 0.66 | 0.659141 |
Target: 5'- -cUGCUUCGACgauggUCgGCGGGCC-UCGCg -3' miRNA: 3'- gcACGGAGCUG-----GGgCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 71733 | 0.7 | 0.419243 |
Target: 5'- --aGCCagGACUCCGCGacaGCCAUCGCg -3' miRNA: 3'- gcaCGGagCUGGGGCGUc--CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90973 | 0.66 | 0.64949 |
Target: 5'- --cGCCcgCGugCCguCGCGGaacaccGCCGCCGCg -3' miRNA: 3'- gcaCGGa-GCugGG--GCGUC------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 144776 | 0.69 | 0.444568 |
Target: 5'- -aUGCCcgCGcGCCCuggcuCGCGGcGCCGCCGCu -3' miRNA: 3'- gcACGGa-GC-UGGG-----GCGUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 132801 | 0.69 | 0.470727 |
Target: 5'- aCGUGCCguacgCGAUCCUuCAGGUCucaCGCg -3' miRNA: 3'- -GCACGGa----GCUGGGGcGUCCGGug-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 157952 | 0.68 | 0.497646 |
Target: 5'- gCGUgGCCUCGaACUCCGCGuGUCgcuuGCCGCc -3' miRNA: 3'- -GCA-CGGAGC-UGGGGCGUcCGG----UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114903 | 0.68 | 0.515048 |
Target: 5'- uCGUGCCgagccguucuccgUCGauaagGCUCCGCGGGCaCACgUGCg -3' miRNA: 3'- -GCACGG-------------AGC-----UGGGGCGUCCG-GUG-GCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114471 | 0.68 | 0.525235 |
Target: 5'- --cGCCUCGACgCgGCacugcgcaacgAGGCCGCCa- -3' miRNA: 3'- gcaCGGAGCUGgGgCG-----------UCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 130018 | 0.68 | 0.543945 |
Target: 5'- --aGaCCggaaCGGCgCCGCAGGCUuCCGCg -3' miRNA: 3'- gcaC-GGa---GCUGgGGCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 8006 | 0.67 | 0.572396 |
Target: 5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3' miRNA: 3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 82494 | 0.67 | 0.572396 |
Target: 5'- --cGCCUccaaccgaccCGACCCgCGCGGaGCCAUUGUc -3' miRNA: 3'- gcaCGGA----------GCUGGG-GCGUC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 151780 | 0.67 | 0.591561 |
Target: 5'- gCGgGUaCUUG-CCCCGcCAGGCC-CCGCc -3' miRNA: 3'- -GCaCG-GAGCuGGGGC-GUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 99194 | 0.67 | 0.601185 |
Target: 5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3' miRNA: 3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 128207 | 0.66 | 0.61083 |
Target: 5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3' miRNA: 3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 76954 | 0.66 | 0.630157 |
Target: 5'- aCGagGCCUuucaCGGCCUCGguGGUCACaaGCa -3' miRNA: 3'- -GCa-CGGA----GCUGGGGCguCCGGUGg-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 14183 | 0.66 | 0.643692 |
Target: 5'- --cGCCUCGguggcgaucgccgucGCCCCaucGGCCACgGCg -3' miRNA: 3'- gcaCGGAGC---------------UGGGGcguCCGGUGgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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