miRNA display CGI


Results 61 - 80 of 150 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 97370 0.75 0.218856
Target:  5'- gCGUGCaugCGAgCUCGCAGGCCcgcagGCCGUg -3'
miRNA:   3'- -GCACGga-GCUgGGGCGUCCGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 143732 0.7 0.410999
Target:  5'- aGUG-CUCGuCUCCGC--GCCGCCGCg -3'
miRNA:   3'- gCACgGAGCuGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 69000 0.66 0.61083
Target:  5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3'
miRNA:   3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 42601 0.67 0.601185
Target:  5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3'
miRNA:   3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 25135 0.67 0.581962
Target:  5'- cCGUGUCUCGGCCgaGUAGuUgGCCGUg -3'
miRNA:   3'- -GCACGGAGCUGGggCGUCcGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 8006 0.67 0.572396
Target:  5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3'
miRNA:   3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39474 0.67 0.562867
Target:  5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3'
miRNA:   3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 33994 0.67 0.553382
Target:  5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3'
miRNA:   3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 116238 0.72 0.30013
Target:  5'- cCGU-CCUCG-CCCCGCAGGgacagagccuCCGCaCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGGGCGUCC----------GGUG-GCG- -5'
24741 3' -62.9 NC_005264.1 + 4999 0.67 0.553382
Target:  5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3'
miRNA:   3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 39715 0.68 0.506773
Target:  5'- ---cCCUCGGCCCCGUcGuGCCgcgacGCCGCc -3'
miRNA:   3'- gcacGGAGCUGGGGCGuC-CGG-----UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 130271 0.68 0.497646
Target:  5'- gGUGCg-CGACgUUGCGgcGGCUACCGCg -3'
miRNA:   3'- gCACGgaGCUGgGGCGU--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 144776 0.69 0.444568
Target:  5'- -aUGCCcgCGcGCCCuggcuCGCGGcGCCGCCGCu -3'
miRNA:   3'- gcACGGa-GC-UGGG-----GCGUC-CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 71733 0.7 0.419243
Target:  5'- --aGCCagGACUCCGCGacaGCCAUCGCg -3'
miRNA:   3'- gcaCGGagCUGGGGCGUc--CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 133207 0.71 0.379048
Target:  5'- -cUGCCUgGAcgaccucuuuaCCCCGUGcGCCGCCGCg -3'
miRNA:   3'- gcACGGAgCU-----------GGGGCGUcCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 44775 0.71 0.372092
Target:  5'- gGUGCCcgcggcgaucguugcCGACgCCGC-GGUCGCCGCg -3'
miRNA:   3'- gCACGGa--------------GCUGgGGCGuCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 41391 0.71 0.339355
Target:  5'- aCGUGUCcgCGGCCUCcgcuuucuuccuagGCAGGCCGgCGCc -3'
miRNA:   3'- -GCACGGa-GCUGGGG--------------CGUCCGGUgGCG- -5'
24741 3' -62.9 NC_005264.1 + 85917 0.66 0.62049
Target:  5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3'
miRNA:   3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 122789 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.