Results 101 - 120 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 79727 | 0.67 | 0.591561 |
Target: 5'- gCG-GCCUUGGCgCCCGUcGGCguaCACCuGCg -3' miRNA: 3'- -GCaCGGAGCUG-GGGCGuCCG---GUGG-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 44133 | 0.67 | 0.598295 |
Target: 5'- --cGUCUCGcagcccuucucccaACaCCCGCAGGgCaACCGCg -3' miRNA: 3'- gcaCGGAGC--------------UG-GGGCGUCCgG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 85917 | 0.66 | 0.62049 |
Target: 5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3' miRNA: 3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 122789 | 0.66 | 0.61083 |
Target: 5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3' miRNA: 3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 161628 | 0.67 | 0.601185 |
Target: 5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3' miRNA: 3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 117176 | 0.66 | 0.61083 |
Target: 5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3' miRNA: 3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 127033 | 0.67 | 0.572396 |
Target: 5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3' miRNA: 3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 113457 | 0.67 | 0.572396 |
Target: 5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3' miRNA: 3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62917 | 0.67 | 0.601185 |
Target: 5'- --aGCUUa-GCCgCGCGGGCUugCGCg -3' miRNA: 3'- gcaCGGAgcUGGgGCGUCCGGugGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 64289 | 0.68 | 0.525235 |
Target: 5'- gGUGCCgaguaucgCGGCCCacaGCGcguuGCCGCUGCc -3' miRNA: 3'- gCACGGa-------GCUGGGg--CGUc---CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 159019 | 0.68 | 0.525235 |
Target: 5'- ---uCCUgCGGCCCCGCccGGGCCcgaacucgcggACCGCc -3' miRNA: 3'- gcacGGA-GCUGGGGCG--UCCGG-----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 137610 | 0.68 | 0.532691 |
Target: 5'- --cGCCUCaACUCUGCcggcacugcccuGGCCACCGUg -3' miRNA: 3'- gcaCGGAGcUGGGGCGu-----------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 13591 | 0.68 | 0.533625 |
Target: 5'- --gGCUUCGGCCCCaGCGccacaccGGCCagcgacagugACCGCu -3' miRNA: 3'- gcaCGGAGCUGGGG-CGU-------CCGG----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 124026 | 0.67 | 0.553382 |
Target: 5'- uCGU-UCUCGuCCgCGCcgGGGUCGCCGCg -3' miRNA: 3'- -GCAcGGAGCuGGgGCG--UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 153021 | 0.67 | 0.553382 |
Target: 5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3' miRNA: 3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 32537 | 0.67 | 0.553382 |
Target: 5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3' miRNA: 3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62743 | 0.67 | 0.561917 |
Target: 5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3' miRNA: 3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90511 | 0.67 | 0.562867 |
Target: 5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3' miRNA: 3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158560 | 0.67 | 0.562867 |
Target: 5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3' miRNA: 3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158501 | 0.67 | 0.562867 |
Target: 5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3' miRNA: 3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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