Results 121 - 140 of 150 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24741 | 3' | -62.9 | NC_005264.1 | + | 67463 | 0.66 | 0.639826 |
Target: 5'- gCG-GCCagcUCGugaaaCCCGaggcCGGGCCGCCGCc -3' miRNA: 3'- -GCaCGG---AGCug---GGGC----GUCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 68251 | 0.66 | 0.639826 |
Target: 5'- -aUGCC-CG-CgCCGCGGGCgGCCuGCu -3' miRNA: 3'- gcACGGaGCuGgGGCGUCCGgUGG-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 32910 | 0.66 | 0.64949 |
Target: 5'- gCGU-UCUCGAUCgcgcaggggUCGCGGGgCGCCGCg -3' miRNA: 3'- -GCAcGGAGCUGG---------GGCGUCCgGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 42346 | 0.66 | 0.64949 |
Target: 5'- --gGCCUCGcCCCCGCca-CCuacuCCGCg -3' miRNA: 3'- gcaCGGAGCuGGGGCGuccGGu---GGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 87714 | 0.66 | 0.64949 |
Target: 5'- -aUGCCgaGGCCuuGguGGCUuucaucGCCGCa -3' miRNA: 3'- gcACGGagCUGGggCguCCGG------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 44133 | 0.67 | 0.598295 |
Target: 5'- --cGUCUCGcagcccuucucccaACaCCCGCAGGgCaACCGCg -3' miRNA: 3'- gcaCGGAGC--------------UG-GGGCGUCCgG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 79727 | 0.67 | 0.591561 |
Target: 5'- gCG-GCCUUGGCgCCCGUcGGCguaCACCuGCg -3' miRNA: 3'- -GCaCGGAGCUG-GGGCGuCCG---GUGG-CG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 153021 | 0.67 | 0.553382 |
Target: 5'- aCGUGCggCGGCCCaUGUA-GCCgGCCGCg -3' miRNA: 3'- -GCACGgaGCUGGG-GCGUcCGG-UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 32537 | 0.67 | 0.553382 |
Target: 5'- ---uCCUCGGCCCUgGCuguggauguGGCUGCCGCg -3' miRNA: 3'- gcacGGAGCUGGGG-CGu--------CCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 62743 | 0.67 | 0.561917 |
Target: 5'- --cGCgUCGucgcugaGCCCCGC-GGCCGCCa- -3' miRNA: 3'- gcaCGgAGC-------UGGGGCGuCCGGUGGcg -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 90511 | 0.67 | 0.562867 |
Target: 5'- --cGUCUCGGCCaUCGacgaAGGCCaaACCGCc -3' miRNA: 3'- gcaCGGAGCUGG-GGCg---UCCGG--UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158501 | 0.67 | 0.562867 |
Target: 5'- aCGcGCgCUCaGCCgCCagggGCAGGCCugCGCu -3' miRNA: 3'- -GCaCG-GAGcUGG-GG----CGUCCGGugGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 158560 | 0.67 | 0.562867 |
Target: 5'- aCGUGCuCUCugccgccGCCCCGC-GGUUcCCGCg -3' miRNA: 3'- -GCACG-GAGc------UGGGGCGuCCGGuGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 113457 | 0.67 | 0.572396 |
Target: 5'- gCGggGUCggacCGACCCCGCGGucguGCCACgGUc -3' miRNA: 3'- -GCa-CGGa---GCUGGGGCGUC----CGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 127033 | 0.67 | 0.572396 |
Target: 5'- gCGggGCCggcagaGGCgCCCGCcacgacGGcGCCACCGCg -3' miRNA: 3'- -GCa-CGGag----CUG-GGGCG------UC-CGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 39555 | 0.67 | 0.581962 |
Target: 5'- gCGUGUUgauuaGAucCCCCGCGGGCCcagagaguauGCUGCc -3' miRNA: 3'- -GCACGGag---CU--GGGGCGUCCGG----------UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 61486 | 0.67 | 0.581962 |
Target: 5'- gCGcGCCgacgCG-CCCCGCGgucucGGCUagcGCCGCg -3' miRNA: 3'- -GCaCGGa---GCuGGGGCGU-----CCGG---UGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 106010 | 0.67 | 0.581962 |
Target: 5'- --aGCCaCGAgCCgcuaGCuaGGGCCGCCGCg -3' miRNA: 3'- gcaCGGaGCUgGGg---CG--UCCGGUGGCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 114747 | 0.67 | 0.581962 |
Target: 5'- gCGUGCa--GAaCCCGCGcGGCCGCgGUa -3' miRNA: 3'- -GCACGgagCUgGGGCGU-CCGGUGgCG- -5' |
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24741 | 3' | -62.9 | NC_005264.1 | + | 71603 | 0.67 | 0.581962 |
Target: 5'- --gGCCUgGAUagagcuaCGCGGGCUAUCGCg -3' miRNA: 3'- gcaCGGAgCUGgg-----GCGUCCGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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