miRNA display CGI


Results 21 - 40 of 150 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 3' -62.9 NC_005264.1 + 85917 0.66 0.62049
Target:  5'- gCGcUGaCUCuGACCgCGUcugAGGCCACCGUc -3'
miRNA:   3'- -GC-ACgGAG-CUGGgGCG---UCCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62350 0.66 0.62049
Target:  5'- --cGCC-CGcaACCCCuccaggGCccuGGCCGCCGCg -3'
miRNA:   3'- gcaCGGaGC--UGGGG------CGu--CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 114134 0.66 0.62049
Target:  5'- --cGCCUCaucUCCCGCGaGCgACCGCg -3'
miRNA:   3'- gcaCGGAGcu-GGGGCGUcCGgUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 131648 0.66 0.62049
Target:  5'- --cGCCUCGGuCUgCGguGcCCGCCGCc -3'
miRNA:   3'- gcaCGGAGCU-GGgGCguCcGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 236 0.66 0.61083
Target:  5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3'
miRNA:   3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5'
24741 3' -62.9 NC_005264.1 + 128207 0.66 0.61083
Target:  5'- cCGgugGCCgCGAacaCCCCGCGGGCCuugaacaaACgGUa -3'
miRNA:   3'- -GCa--CGGaGCU---GGGGCGUCCGG--------UGgCG- -5'
24741 3' -62.9 NC_005264.1 + 122789 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 119263 0.66 0.61083
Target:  5'- cCGUGCCU-GGCgCCacagcgagGCGGGCCGCuCGa -3'
miRNA:   3'- -GCACGGAgCUGgGG--------CGUCCGGUG-GCg -5'
24741 3' -62.9 NC_005264.1 + 117176 0.66 0.61083
Target:  5'- aCGUGCUUC-ACUgCGCuuggcgccuaGCCGCCGCg -3'
miRNA:   3'- -GCACGGAGcUGGgGCGuc--------CGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 69000 0.66 0.61083
Target:  5'- aGUgGCCcgCGGCCCUGUc-GCCAUCGUa -3'
miRNA:   3'- gCA-CGGa-GCUGGGGCGucCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 3763 0.66 0.61083
Target:  5'- --cGCCggGGCgCUGCGGGCCcuuggucgaccGCCGCc -3'
miRNA:   3'- gcaCGGagCUGgGGCGUCCGG-----------UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 26073 0.66 0.609865
Target:  5'- uGUGCCUagccCGGCgCUguuuuuggccauaGCuaaacuGGCCACCGCg -3'
miRNA:   3'- gCACGGA----GCUGgGG-------------CGu-----CCGGUGGCG- -5'
24741 3' -62.9 NC_005264.1 + 63446 0.67 0.601185
Target:  5'- -uUGCCUgGcauACCCCGCuccGCCGuuGCg -3'
miRNA:   3'- gcACGGAgC---UGGGGCGuc-CGGUggCG- -5'
24741 3' -62.9 NC_005264.1 + 42601 0.67 0.601185
Target:  5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3'
miRNA:   3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 99194 0.67 0.601185
Target:  5'- aCGUGgg--GuCCUCGCAGGCCuCCGCg -3'
miRNA:   3'- -GCACggagCuGGGGCGUCCGGuGGCG- -5'
24741 3' -62.9 NC_005264.1 + 161628 0.67 0.601185
Target:  5'- uGUGCa---ACCCCGCA-GCCaugGCCGCg -3'
miRNA:   3'- gCACGgagcUGGGGCGUcCGG---UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 62917 0.67 0.601185
Target:  5'- --aGCUUa-GCCgCGCGGGCUugCGCg -3'
miRNA:   3'- gcaCGGAgcUGGgGCGUCCGGugGCG- -5'
24741 3' -62.9 NC_005264.1 + 75900 0.67 0.601185
Target:  5'- -aUGCCUCGAUCaCGUAGaaaGCCACUGg -3'
miRNA:   3'- gcACGGAGCUGGgGCGUC---CGGUGGCg -5'
24741 3' -62.9 NC_005264.1 + 44133 0.67 0.598295
Target:  5'- --cGUCUCGcagcccuucucccaACaCCCGCAGGgCaACCGCg -3'
miRNA:   3'- gcaCGGAGC--------------UG-GGGCGUCCgG-UGGCG- -5'
24741 3' -62.9 NC_005264.1 + 7580 0.67 0.591561
Target:  5'- --cGCCU--ACCCCGC--GCCGCUGCg -3'
miRNA:   3'- gcaCGGAgcUGGGGCGucCGGUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.