miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24741 5' -52.2 NC_005264.1 + 44828 0.66 0.988669
Target:  5'- ---aGGUGGCUCAugggcauagugccccCGAUGACCUUGUu -3'
miRNA:   3'- cuugCUACUGGGU---------------GCUACUGGAGCAu -5'
24741 5' -52.2 NC_005264.1 + 107754 0.66 0.98808
Target:  5'- -uGCGAguUGcCuCCGCGucaAUGGCCUCGUAa -3'
miRNA:   3'- cuUGCU--ACuG-GGUGC---UACUGGAGCAU- -5'
24741 5' -52.2 NC_005264.1 + 59984 0.66 0.98808
Target:  5'- cGGCGGUGGCCgcgaGCGAgacGGCCgCGUGg -3'
miRNA:   3'- cUUGCUACUGGg---UGCUa--CUGGaGCAU- -5'
24741 5' -52.2 NC_005264.1 + 157800 0.66 0.986502
Target:  5'- aGGCGgcG-CCCACGAcgcgGAaCCUCGUGg -3'
miRNA:   3'- cUUGCuaCuGGGUGCUa---CU-GGAGCAU- -5'
24741 5' -52.2 NC_005264.1 + 123508 0.67 0.978546
Target:  5'- uGGGCGAUGugCuCGCGGUGuCCaaGUGc -3'
miRNA:   3'- -CUUGCUACugG-GUGCUACuGGagCAU- -5'
24741 5' -52.2 NC_005264.1 + 142525 0.67 0.976103
Target:  5'- --cCGGUG-CCCACGAUacagcGACCUCa-- -3'
miRNA:   3'- cuuGCUACuGGGUGCUA-----CUGGAGcau -5'
24741 5' -52.2 NC_005264.1 + 102801 0.67 0.973462
Target:  5'- -cGCGAUG-CCCGCGAUGAgaggggCGUAg -3'
miRNA:   3'- cuUGCUACuGGGUGCUACUgga---GCAU- -5'
24741 5' -52.2 NC_005264.1 + 111039 0.67 0.970617
Target:  5'- aAGCGGUGGCUCGCGcgGA-CUCGc- -3'
miRNA:   3'- cUUGCUACUGGGUGCuaCUgGAGCau -5'
24741 5' -52.2 NC_005264.1 + 93071 0.67 0.967559
Target:  5'- -uGCGGgagGGgCCGCGgcGACCUCGg- -3'
miRNA:   3'- cuUGCUa--CUgGGUGCuaCUGGAGCau -5'
24741 5' -52.2 NC_005264.1 + 73067 0.68 0.964283
Target:  5'- uGGACgGAUGGCCCGCGcgGcAUCUCu-- -3'
miRNA:   3'- -CUUG-CUACUGGGUGCuaC-UGGAGcau -5'
24741 5' -52.2 NC_005264.1 + 157939 0.68 0.960781
Target:  5'- gGGACGgcGGCCaGCG-UGGCCUCGa- -3'
miRNA:   3'- -CUUGCuaCUGGgUGCuACUGGAGCau -5'
24741 5' -52.2 NC_005264.1 + 33395 0.68 0.953082
Target:  5'- uGGCGAUGGCgaCCGCGGUGAUgUUGg- -3'
miRNA:   3'- cUUGCUACUG--GGUGCUACUGgAGCau -5'
24741 5' -52.2 NC_005264.1 + 120147 0.69 0.918455
Target:  5'- gGAGCGccGGCCgGCGAUGACCgagCa-- -3'
miRNA:   3'- -CUUGCuaCUGGgUGCUACUGGa--Gcau -5'
24741 5' -52.2 NC_005264.1 + 85653 0.72 0.81323
Target:  5'- -cGCGAUGGCCCGCGAgcgcGACaugaacguuguggCUCGUGc -3'
miRNA:   3'- cuUGCUACUGGGUGCUa---CUG-------------GAGCAU- -5'
24741 5' -52.2 NC_005264.1 + 47780 0.72 0.805132
Target:  5'- --cCGAUGGCCugCACGAaGACCUCGg- -3'
miRNA:   3'- cuuGCUACUGG--GUGCUaCUGGAGCau -5'
24741 5' -52.2 NC_005264.1 + 146390 1.07 0.009414
Target:  5'- gGAACGAUGACCCACGAUGACCUCGUAg -3'
miRNA:   3'- -CUUGCUACUGGGUGCUACUGGAGCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.