miRNA display CGI


Results 21 - 40 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 3' -45.7 NC_005264.1 + 125629 0.66 0.99999
Target:  5'- gGAaaGCCGguCGggAGUCCAU--GGAGCg -3'
miRNA:   3'- gCU--UGGCguGCa-UUAGGUGuaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 118115 0.66 0.99999
Target:  5'- uGGAUCGC-UGU-AUCCGCGU-AGGCc -3'
miRNA:   3'- gCUUGGCGuGCAuUAGGUGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 16341 0.66 0.99999
Target:  5'- gGAACCGCGCGg---CC-CAgGGAGa -3'
miRNA:   3'- gCUUGGCGUGCauuaGGuGUaUUUCg -5'
24742 3' -45.7 NC_005264.1 + 151000 0.66 0.99999
Target:  5'- aCGGGCCGCGUGUccGAUgCGCGcUAcAGCg -3'
miRNA:   3'- -GCUUGGCGUGCA--UUAgGUGU-AUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 125540 0.66 0.99999
Target:  5'- cCGGucuuGCCGUaguacACGUAAUCgGCGgcagGGGGCu -3'
miRNA:   3'- -GCU----UGGCG-----UGCAUUAGgUGUa---UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 142971 0.66 0.99999
Target:  5'- -cGGCCGCgGCGgucUCUcggGCAUGAGGCg -3'
miRNA:   3'- gcUUGGCG-UGCauuAGG---UGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 86741 0.66 0.99999
Target:  5'- uGAuGCCGCGCuGUucgcgCC-CGUAGAGCc -3'
miRNA:   3'- gCU-UGGCGUG-CAuua--GGuGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 7775 0.66 0.99999
Target:  5'- aGGACgGCuucaGCGUGauGUCCAgGUcuAGCg -3'
miRNA:   3'- gCUUGgCG----UGCAU--UAGGUgUAuuUCG- -5'
24742 3' -45.7 NC_005264.1 + 94412 0.66 0.99999
Target:  5'- -aGGCCGCGgcgccgGUAGUCCAgAgcGAGCa -3'
miRNA:   3'- gcUUGGCGUg-----CAUUAGGUgUauUUCG- -5'
24742 3' -45.7 NC_005264.1 + 31973 0.66 0.99999
Target:  5'- aCGGGCCGCGUGUccGAUgCGCGcUAcAGCg -3'
miRNA:   3'- -GCUUGGCGUGCA--UUAgGUGU-AUuUCG- -5'
24742 3' -45.7 NC_005264.1 + 6513 0.66 0.99999
Target:  5'- cCGGucuuGCCGUaguacACGUAAUCgGCGgcagGGGGCu -3'
miRNA:   3'- -GCU----UGGCG-----UGCAUUAGgUGUa---UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 136356 0.66 0.999985
Target:  5'- uCGGcGCCGCACGggcccucuGUCUACuAUGAcguAGCa -3'
miRNA:   3'- -GCU-UGGCGUGCau------UAGGUG-UAUU---UCG- -5'
24742 3' -45.7 NC_005264.1 + 123202 0.66 0.999985
Target:  5'- aCGAgGCCGCGCGgcaaaaCCACAgcgccgugucuaGGAGCa -3'
miRNA:   3'- -GCU-UGGCGUGCauua--GGUGUa-----------UUUCG- -5'
24742 3' -45.7 NC_005264.1 + 21344 0.66 0.999985
Target:  5'- aGAugCGC-CGggg-CCGgAUGAGGCu -3'
miRNA:   3'- gCUugGCGuGCauuaGGUgUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 78758 0.66 0.999985
Target:  5'- aGAugCGCcCGcUGcUCCGCAUGAgccagggGGCg -3'
miRNA:   3'- gCUugGCGuGC-AUuAGGUGUAUU-------UCG- -5'
24742 3' -45.7 NC_005264.1 + 41581 0.66 0.999985
Target:  5'- gGAACCGCucgACGUGgcGUCUaaACAU-GGGCc -3'
miRNA:   3'- gCUUGGCG---UGCAU--UAGG--UGUAuUUCG- -5'
24742 3' -45.7 NC_005264.1 + 25836 0.66 0.999985
Target:  5'- cCGAACagGCugGa----CGCAUGAAGCg -3'
miRNA:   3'- -GCUUGg-CGugCauuagGUGUAUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 110234 0.66 0.999985
Target:  5'- aCGAuuCCaagGCAUGUcagccAAUCCACGUAgcGCg -3'
miRNA:   3'- -GCUu-GG---CGUGCA-----UUAGGUGUAUuuCG- -5'
24742 3' -45.7 NC_005264.1 + 115179 0.67 0.99998
Target:  5'- uCGAAcCCGCACG-AGUCUg---GAGGCu -3'
miRNA:   3'- -GCUU-GGCGUGCaUUAGGuguaUUUCG- -5'
24742 3' -45.7 NC_005264.1 + 133198 0.67 0.99998
Target:  5'- gCGGACCGacuGCGggccucguucGUCCGCgccGUAGAGCu -3'
miRNA:   3'- -GCUUGGCg--UGCau--------UAGGUG---UAUUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.