miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24742 5' -61.7 NC_005264.1 + 42297 0.66 0.691625
Target:  5'- -cGG-CUUCCgGGGCCGuCGCaGGgcugCCg -3'
miRNA:   3'- uaCCaGAGGGaCCCGGC-GCG-CCaa--GG- -5'
24742 5' -61.7 NC_005264.1 + 39530 0.66 0.681905
Target:  5'- -aGGacgugCUCUCUGccGCCGCcccGCGGUUCCc -3'
miRNA:   3'- uaCCa----GAGGGACc-CGGCG---CGCCAAGG- -5'
24742 5' -61.7 NC_005264.1 + 143764 0.66 0.681905
Target:  5'- cUGG-CUCCCUaugcgcGGGaaGCGCGcUUCCc -3'
miRNA:   3'- uACCaGAGGGA------CCCggCGCGCcAAGG- -5'
24742 5' -61.7 NC_005264.1 + 158557 0.66 0.681905
Target:  5'- -aGGacgugCUCUCUGccGCCGCcccGCGGUUCCc -3'
miRNA:   3'- uaCCa----GAGGGACc-CGGCG---CGCCAAGG- -5'
24742 5' -61.7 NC_005264.1 + 66799 0.66 0.662359
Target:  5'- -cGGUCcCgCCUGGGCCa-GCGGcgUCUa -3'
miRNA:   3'- uaCCAGaG-GGACCCGGcgCGCCa-AGG- -5'
24742 5' -61.7 NC_005264.1 + 123265 0.66 0.662359
Target:  5'- -gGGgcagcauaCUCUCUGGGCC-CGCGGgggaUCUa -3'
miRNA:   3'- uaCCa-------GAGGGACCCGGcGCGCCa---AGG- -5'
24742 5' -61.7 NC_005264.1 + 82812 0.67 0.617158
Target:  5'- aGUGGUCUCCCccgcuccaaccgagaUGuGCCGCGCcuccucUUCCg -3'
miRNA:   3'- -UACCAGAGGG---------------ACcCGGCGCGcc----AAGG- -5'
24742 5' -61.7 NC_005264.1 + 132328 0.67 0.603414
Target:  5'- cGUGGagCUCCCcggaggacGGCCGCGCGGagCa -3'
miRNA:   3'- -UACCa-GAGGGac------CCGGCGCGCCaaGg -5'
24742 5' -61.7 NC_005264.1 + 13301 0.67 0.603414
Target:  5'- cGUGGagCUCCCcggaggacGGCCGCGCGGagCa -3'
miRNA:   3'- -UACCa-GAGGGac------CCGGCGCGCCaaGg -5'
24742 5' -61.7 NC_005264.1 + 10039 0.68 0.564415
Target:  5'- -cGGUCa-CCUGGGCUGUGCGag-CCc -3'
miRNA:   3'- uaCCAGagGGACCCGGCGCGCcaaGG- -5'
24742 5' -61.7 NC_005264.1 + 96211 0.68 0.545155
Target:  5'- uUGGcagCUUgCCUcGGGCCGCGaCGGcgCCg -3'
miRNA:   3'- uACCa--GAG-GGA-CCCGGCGC-GCCaaGG- -5'
24742 5' -61.7 NC_005264.1 + 108668 0.68 0.535604
Target:  5'- --cGUCUCCC--GGCCaggGCGCGGUuUCCg -3'
miRNA:   3'- uacCAGAGGGacCCGG---CGCGCCA-AGG- -5'
24742 5' -61.7 NC_005264.1 + 133964 0.68 0.535604
Target:  5'- -gGGUCUUCgCggUGGcguucGCCGCGCGG-UCCa -3'
miRNA:   3'- uaCCAGAGG-G--ACC-----CGGCGCGCCaAGG- -5'
24742 5' -61.7 NC_005264.1 + 6990 0.69 0.516684
Target:  5'- -cGGUCUCCUccucggcgUGGcCCGCGgCGGcUCCu -3'
miRNA:   3'- uaCCAGAGGG--------ACCcGGCGC-GCCaAGG- -5'
24742 5' -61.7 NC_005264.1 + 126017 0.69 0.516684
Target:  5'- -cGGUCUCCUccucggcgUGGcCCGCGgCGGcUCCu -3'
miRNA:   3'- uaCCAGAGGG--------ACCcGGCGC-GCCaAGG- -5'
24742 5' -61.7 NC_005264.1 + 144262 0.69 0.498037
Target:  5'- cUGGcUCgcugCCUUGGGCCG-GCGGaugCCg -3'
miRNA:   3'- uACC-AGa---GGGACCCGGCgCGCCaa-GG- -5'
24742 5' -61.7 NC_005264.1 + 63071 0.69 0.479698
Target:  5'- -cGGUCUCCagcucggcgaGGGCCGuCGCGGaaaggCCu -3'
miRNA:   3'- uaCCAGAGGga--------CCCGGC-GCGCCaa---GG- -5'
24742 5' -61.7 NC_005264.1 + 73698 0.7 0.456364
Target:  5'- aAUGGuUUUCCCUGGcGCCaguaccgacggccuuGCGCgGGUUCUc -3'
miRNA:   3'- -UACC-AGAGGGACC-CGG---------------CGCG-CCAAGG- -5'
24742 5' -61.7 NC_005264.1 + 25293 0.7 0.452829
Target:  5'- ---uUUUCCCUGGGuCCGCgaaGCGGUcuUCCu -3'
miRNA:   3'- uaccAGAGGGACCC-GGCG---CGCCA--AGG- -5'
24742 5' -61.7 NC_005264.1 + 66594 0.7 0.4268
Target:  5'- -aGGcUCUCgCUGGGCUGCGcCGcGUUgCCg -3'
miRNA:   3'- uaCC-AGAGgGACCCGGCGC-GC-CAA-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.