miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 22452 0.66 0.976704
Target:  5'- aCGCUuCGAAugU-ACGCGCAUAUUggGCg -3'
miRNA:   3'- -GCGA-GCUUugAgUGCGCGUGUGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 108502 0.66 0.974127
Target:  5'- gGCUCGccAUaaACGcCGCGCGCUUACu -3'
miRNA:   3'- gCGAGCuuUGagUGC-GCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 116828 0.66 0.978857
Target:  5'- gGUUCGAGuauggcccagaacAC-UugGCGUACGCUUGCg -3'
miRNA:   3'- gCGAGCUU-------------UGaGugCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 146326 0.66 0.976704
Target:  5'- aGCUauccuGACUCucgGCGUGCGCGCCgaaugACg -3'
miRNA:   3'- gCGAgcu--UUGAG---UGCGCGUGUGGa----UG- -5'
24743 3' -52.9 NC_005264.1 + 65727 0.66 0.976704
Target:  5'- aGCUCaGAGGC-CAacuCGCGCugGCCg-- -3'
miRNA:   3'- gCGAG-CUUUGaGU---GCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 143734 0.66 0.974127
Target:  5'- uGCUCGu--CUC-CGCGC-CGCCg-- -3'
miRNA:   3'- gCGAGCuuuGAGuGCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 72740 0.67 0.961386
Target:  5'- aCGUUCGAuuauucuAGCUUccgugACGCGUGCGCCguaGCg -3'
miRNA:   3'- -GCGAGCU-------UUGAG-----UGCGCGUGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 117416 0.67 0.954214
Target:  5'- aCGCuaUCGggGCUguCGCGgCGCGCaggGCg -3'
miRNA:   3'- -GCG--AGCuuUGAguGCGC-GUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 57490 0.67 0.961741
Target:  5'- gGCggCGAAgauGCUgGCGCGCGCGgCgGCg -3'
miRNA:   3'- gCGa-GCUU---UGAgUGCGCGUGUgGaUG- -5'
24743 3' -52.9 NC_005264.1 + 156796 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 27666 0.67 0.954214
Target:  5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3'
miRNA:   3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 45542 0.67 0.961741
Target:  5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3'
miRNA:   3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 121440 0.67 0.961741
Target:  5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3'
miRNA:   3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 92070 0.67 0.961741
Target:  5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3'
miRNA:   3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 33098 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 5940 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 131693 0.67 0.958093
Target:  5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3'
miRNA:   3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.