miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 45542 0.67 0.961741
Target:  5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3'
miRNA:   3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 121440 0.67 0.961741
Target:  5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3'
miRNA:   3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 92070 0.67 0.961741
Target:  5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3'
miRNA:   3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 33098 0.67 0.958093
Target:  5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3'
miRNA:   3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 5940 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 131693 0.67 0.958093
Target:  5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3'
miRNA:   3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 35013 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 142861 0.67 0.965162
Target:  5'- gCGgUCGGuuuguugcgucGACUCGCGC-CGCGCCUu- -3'
miRNA:   3'- -GCgAGCU-----------UUGAGUGCGcGUGUGGAug -5'
24743 3' -52.9 NC_005264.1 + 23413 0.67 0.965162
Target:  5'- gGC-CGAg---CACGCGUACGCCaGCg -3'
miRNA:   3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 72740 0.67 0.961386
Target:  5'- aCGUUCGAuuauucuAGCUUccgugACGCGUGCGCCguaGCg -3'
miRNA:   3'- -GCGAGCU-------UUGAG-----UGCGCGUGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 57490 0.67 0.961741
Target:  5'- gGCggCGAAgauGCUgGCGCGCGCGgCgGCg -3'
miRNA:   3'- gCGa-GCUU---UGAgUGCGCGUGUgGaUG- -5'
24743 3' -52.9 NC_005264.1 + 24699 0.67 0.964159
Target:  5'- aCGC-CGAAgauggucgguaugaGgUCugGCGuUACGCCUACg -3'
miRNA:   3'- -GCGaGCUU--------------UgAGugCGC-GUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 645 0.67 0.968363
Target:  5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3'
miRNA:   3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5'
24743 3' -52.9 NC_005264.1 + 159558 0.66 0.979087
Target:  5'- aGCUCacGACUCugGCGCugaaugccCACCcACc -3'
miRNA:   3'- gCGAGcuUUGAGugCGCGu-------GUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 82248 0.66 0.974127
Target:  5'- uGCuuUCGggGCUCGCGacagGCGgCACCggaGCg -3'
miRNA:   3'- gCG--AGCuuUGAGUGCg---CGU-GUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 159209 0.66 0.981285
Target:  5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3'
miRNA:   3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 104719 0.66 0.974127
Target:  5'- gGCUgCGcGAGgUCGCGCaGCAgcgcCGCCUACa -3'
miRNA:   3'- gCGA-GC-UUUgAGUGCG-CGU----GUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.