Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24743 | 3' | -52.9 | NC_005264.1 | + | 152125 | 0.67 | 0.958093 |
Target: 5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3' miRNA: 3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 72740 | 0.67 | 0.961386 |
Target: 5'- aCGUUCGAuuauucuAGCUUccgugACGCGUGCGCCguaGCg -3' miRNA: 3'- -GCGAGCU-------UUGAG-----UGCGCGUGUGGa--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 121440 | 0.67 | 0.961741 |
Target: 5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3' miRNA: 3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 57490 | 0.67 | 0.961741 |
Target: 5'- gGCggCGAAgauGCUgGCGCGCGCGgCgGCg -3' miRNA: 3'- gCGa-GCUU---UGAgUGCGCGUGUgGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 92070 | 0.67 | 0.961741 |
Target: 5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3' miRNA: 3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 45542 | 0.67 | 0.961741 |
Target: 5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3' miRNA: 3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 84139 | 0.67 | 0.963136 |
Target: 5'- aGCUCGcGAGCcCcgggaaguggucgcaGCGCGCGCGCCg-- -3' miRNA: 3'- gCGAGC-UUUGaG---------------UGCGCGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 24699 | 0.67 | 0.964159 |
Target: 5'- aCGC-CGAAgauggucgguaugaGgUCugGCGuUACGCCUACg -3' miRNA: 3'- -GCGaGCUU--------------UgAGugCGC-GUGUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 85121 | 0.67 | 0.965162 |
Target: 5'- gCGCauugCGAGACaaaugcCACGCGUACuuCUACg -3' miRNA: 3'- -GCGa---GCUUUGa-----GUGCGCGUGugGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 154040 | 0.67 | 0.965162 |
Target: 5'- gCGCUCGAAGagga-GCGCugGCCg-- -3' miRNA: 3'- -GCGAGCUUUgagugCGCGugUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 35013 | 0.67 | 0.965162 |
Target: 5'- gCGCUCGAAGagga-GCGCugGCCg-- -3' miRNA: 3'- -GCGAGCUUUgagugCGCGugUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 142861 | 0.67 | 0.965162 |
Target: 5'- gCGgUCGGuuuguugcgucGACUCGCGC-CGCGCCUu- -3' miRNA: 3'- -GCgAGCU-----------UUGAGUGCGcGUGUGGAug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 23413 | 0.67 | 0.965162 |
Target: 5'- gGC-CGAg---CACGCGUACGCCaGCg -3' miRNA: 3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 21807 | 0.67 | 0.968363 |
Target: 5'- cCGCaUgGAGACUCGCGa-CACGCCa-- -3' miRNA: 3'- -GCG-AgCUUUGAGUGCgcGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 119672 | 0.67 | 0.968363 |
Target: 5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3' miRNA: 3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 645 | 0.67 | 0.968363 |
Target: 5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3' miRNA: 3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 59774 | 0.66 | 0.970475 |
Target: 5'- aCGCUucgCGGGACUCgucgcccgcaggggGCGCGUagcGCACCaUGCu -3' miRNA: 3'- -GCGA---GCUUUGAG--------------UGCGCG---UGUGG-AUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 114920 | 0.66 | 0.971349 |
Target: 5'- cCG-UCGAuaaGGCUcCGCGgGCACACgUGCg -3' miRNA: 3'- -GCgAGCU---UUGA-GUGCgCGUGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 129151 | 0.66 | 0.971349 |
Target: 5'- gGCUCGGAGCgauGCGCGUuaGCC-ACg -3' miRNA: 3'- gCGAGCUUUGag-UGCGCGugUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 5998 | 0.66 | 0.971349 |
Target: 5'- aGCgCGgcGgUCGCuGUGCGCACCUGa -3' miRNA: 3'- gCGaGCuuUgAGUG-CGCGUGUGGAUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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