miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 61250 0.74 0.69212
Target:  5'- gCGCUCc-AGCUCACG-GCGCGCCUcgGCg -3'
miRNA:   3'- -GCGAGcuUUGAGUGCgCGUGUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 62692 0.67 0.954214
Target:  5'- aGCgCGAAGaaCGCGUGC-UACCUGCg -3'
miRNA:   3'- gCGaGCUUUgaGUGCGCGuGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 65625 0.76 0.58838
Target:  5'- gGCUCGuggguACcCGCGCGCGCACCg-- -3'
miRNA:   3'- gCGAGCuu---UGaGUGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 65727 0.66 0.976704
Target:  5'- aGCUCaGAGGC-CAacuCGCGCugGCCg-- -3'
miRNA:   3'- gCGAG-CUUUGaGU---GCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 66512 0.7 0.891472
Target:  5'- gCGCUCGAcgAGCUCGCuuucGCGCaguacagcaacgcggACGCCgagGCg -3'
miRNA:   3'- -GCGAGCU--UUGAGUG----CGCG---------------UGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 67088 0.66 0.981285
Target:  5'- uGUUCGAGGaaaUCua-CGCGCGCCUAUg -3'
miRNA:   3'- gCGAGCUUUg--AGugcGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 69577 0.7 0.859242
Target:  5'- aGC-CGggGCcCugGCGC-CACCUAg -3'
miRNA:   3'- gCGaGCuuUGaGugCGCGuGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 72740 0.67 0.961386
Target:  5'- aCGUUCGAuuauucuAGCUUccgugACGCGUGCGCCguaGCg -3'
miRNA:   3'- -GCGAGCU-------UUGAG-----UGCGCGUGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 76449 0.66 0.974127
Target:  5'- -uCUCGAAGgaCACGCuGCGCAaCUGCu -3'
miRNA:   3'- gcGAGCUUUgaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 79117 0.66 0.976704
Target:  5'- aGCUCGgcACg-GCgGCGUGCGCUUGCc -3'
miRNA:   3'- gCGAGCuuUGagUG-CGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 81764 0.69 0.920304
Target:  5'- aGCaCGAGACgugCGCGCaGCAUACCg-- -3'
miRNA:   3'- gCGaGCUUUGa--GUGCG-CGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 82248 0.66 0.974127
Target:  5'- uGCuuUCGggGCUCGCGacagGCGgCACCggaGCg -3'
miRNA:   3'- gCG--AGCuuUGAGUGCg---CGU-GUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 83872 0.81 0.346402
Target:  5'- gGCUCGGccgugccgAACUU-CGCGCACACCUGCc -3'
miRNA:   3'- gCGAGCU--------UUGAGuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 84139 0.67 0.963136
Target:  5'- aGCUCGcGAGCcCcgggaaguggucgcaGCGCGCGCGCCg-- -3'
miRNA:   3'- gCGAGC-UUUGaG---------------UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 85121 0.67 0.965162
Target:  5'- gCGCauugCGAGACaaaugcCACGCGUACuuCUACg -3'
miRNA:   3'- -GCGa---GCUUUGa-----GUGCGCGUGugGAUG- -5'
24743 3' -52.9 NC_005264.1 + 85355 0.7 0.877363
Target:  5'- uCGCUCGcAGCgacugcgagguuccgUCGCGUccaucGUACACCUACg -3'
miRNA:   3'- -GCGAGCuUUG---------------AGUGCG-----CGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 86454 0.69 0.910859
Target:  5'- aCGCccUCGAGGCgaaCACGUGguuagcggguaccaaCGCGCCUGCg -3'
miRNA:   3'- -GCG--AGCUUUGa--GUGCGC---------------GUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 88118 0.71 0.851326
Target:  5'- aGCagGAGACaguuUCGCGCGCcGCGcCCUACa -3'
miRNA:   3'- gCGagCUUUG----AGUGCGCG-UGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 92070 0.67 0.961741
Target:  5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3'
miRNA:   3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.