miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 94108 0.66 0.979087
Target:  5'- cCGCcCGAggUUCugGCGC-CGCUg-- -3'
miRNA:   3'- -GCGaGCUuuGAGugCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 95855 0.69 0.895522
Target:  5'- uCGC-CGuuGCUCGCccagGCGUACACCaACg -3'
miRNA:   3'- -GCGaGCuuUGAGUG----CGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 100234 0.68 0.941149
Target:  5'- uGCUCGGAACgUC-CGCGC-CGCUa-- -3'
miRNA:   3'- gCGAGCUUUG-AGuGCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 103201 0.75 0.629928
Target:  5'- uGCUCGcuGCUUGCGagccCGCACACCUGa -3'
miRNA:   3'- gCGAGCuuUGAGUGC----GCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 104719 0.66 0.974127
Target:  5'- gGCUgCGcGAGgUCGCGCaGCAgcgcCGCCUACa -3'
miRNA:   3'- gCGA-GC-UUUgAGUGCG-CGU----GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 108502 0.66 0.974127
Target:  5'- gGCUCGccAUaaACGcCGCGCGCUUACu -3'
miRNA:   3'- gCGAGCuuUGagUGC-GCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 111033 0.68 0.925886
Target:  5'- gGUUCGAAgcggugGCUCGCGCGgACucGCCggACg -3'
miRNA:   3'- gCGAGCUU------UGAGUGCGCgUG--UGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 112278 0.72 0.80881
Target:  5'- gCGCUUcccg--CACGCGCGCGCCUAg -3'
miRNA:   3'- -GCGAGcuuugaGUGCGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 114920 0.66 0.971349
Target:  5'- cCG-UCGAuaaGGCUcCGCGgGCACACgUGCg -3'
miRNA:   3'- -GCgAGCU---UUGA-GUGCgCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 116828 0.66 0.978857
Target:  5'- gGUUCGAGuauggcccagaacAC-UugGCGUACGCUUGCg -3'
miRNA:   3'- gCGAGCUU-------------UGaGugCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 116879 0.69 0.902082
Target:  5'- aGCUUacuGCUCGCGCGCuguuuUACCUAg -3'
miRNA:   3'- gCGAGcuuUGAGUGCGCGu----GUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 117416 0.67 0.954214
Target:  5'- aCGCuaUCGggGCUguCGCGgCGCGCaggGCg -3'
miRNA:   3'- -GCG--AGCuuUGAguGCGC-GUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 117627 0.68 0.936308
Target:  5'- gCGCUCGGcgUUCAUGgGCAUGCUagACa -3'
miRNA:   3'- -GCGAGCUuuGAGUGCgCGUGUGGa-UG- -5'
24743 3' -52.9 NC_005264.1 + 117882 0.69 0.920304
Target:  5'- cCGCUCuaccacgaaGGGAgUCACGCGCGCaacggGCCcGCg -3'
miRNA:   3'- -GCGAG---------CUUUgAGUGCGCGUG-----UGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 119178 0.69 0.919732
Target:  5'- aCGC-CGgcGCgcaGCGCGCcgaccguACACCUACg -3'
miRNA:   3'- -GCGaGCuuUGag-UGCGCG-------UGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 119672 0.67 0.968363
Target:  5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3'
miRNA:   3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5'
24743 3' -52.9 NC_005264.1 + 121440 0.67 0.961741
Target:  5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3'
miRNA:   3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 124966 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 129151 0.66 0.971349
Target:  5'- gGCUCGGAGCgauGCGCGUuaGCC-ACg -3'
miRNA:   3'- gCGAGCUUUGag-UGCGCGugUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 129270 0.66 0.981285
Target:  5'- gGCUCcgcuacCUCGCGCGCAauaaacgaACUUACg -3'
miRNA:   3'- gCGAGcuuu--GAGUGCGCGUg-------UGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.