miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 79117 0.66 0.976704
Target:  5'- aGCUCGgcACg-GCgGCGUGCGCUUGCc -3'
miRNA:   3'- gCGAGCuuUGagUG-CGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 136465 0.72 0.771768
Target:  5'- gCGCUCaGAGACggCGC-CGCGCAgCCUGCc -3'
miRNA:   3'- -GCGAG-CUUUGa-GUGcGCGUGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 23413 0.67 0.965162
Target:  5'- gGC-CGAg---CACGCGUACGCCaGCg -3'
miRNA:   3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 84139 0.67 0.963136
Target:  5'- aGCUCGcGAGCcCcgggaaguggucgcaGCGCGCGCGCCg-- -3'
miRNA:   3'- gCGAGC-UUUGaG---------------UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 124966 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 21807 0.67 0.968363
Target:  5'- cCGCaUgGAGACUCGCGa-CACGCCa-- -3'
miRNA:   3'- -GCG-AgCUUUGAGUGCgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 140818 0.73 0.712535
Target:  5'- aGC-CGAAcGCUCGCGgGCAaaaaACCUACg -3'
miRNA:   3'- gCGaGCUU-UGAGUGCgCGUg---UGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 147077 0.74 0.671498
Target:  5'- uCGCcCGGAgccacGCUCGCGCGCACACa--- -3'
miRNA:   3'- -GCGaGCUU-----UGAGUGCGCGUGUGgaug -5'
24743 3' -52.9 NC_005264.1 + 15577 0.75 0.619518
Target:  5'- aGCUCGuggccAAGCUUGCGgGCGCAgCUGCg -3'
miRNA:   3'- gCGAGC-----UUUGAGUGCgCGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 83872 0.81 0.346402
Target:  5'- gGCUCGGccgugccgAACUU-CGCGCACACCUGCc -3'
miRNA:   3'- gCGAGCU--------UUGAGuGCGCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 5940 0.67 0.958093
Target:  5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3'
miRNA:   3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 159558 0.66 0.979087
Target:  5'- aGCUCacGACUCugGCGCugaaugccCACCcACc -3'
miRNA:   3'- gCGAGcuUUGAGugCGCGu-------GUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 131693 0.67 0.958093
Target:  5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3'
miRNA:   3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 27666 0.67 0.954214
Target:  5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3'
miRNA:   3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 82248 0.66 0.974127
Target:  5'- uGCuuUCGggGCUCGCGacagGCGgCACCggaGCg -3'
miRNA:   3'- gCG--AGCuuUGAGUGCg---CGU-GUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 76449 0.66 0.974127
Target:  5'- -uCUCGAAGgaCACGCuGCGCAaCUGCu -3'
miRNA:   3'- gcGAGCUUUgaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 104719 0.66 0.974127
Target:  5'- gGCUgCGcGAGgUCGCGCaGCAgcgcCGCCUACa -3'
miRNA:   3'- gCGA-GC-UUUgAGUGCG-CGU----GUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.