miRNA display CGI


Results 61 - 80 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 76449 0.66 0.974127
Target:  5'- -uCUCGAAGgaCACGCuGCGCAaCUGCu -3'
miRNA:   3'- gcGAGCUUUgaGUGCG-CGUGUgGAUG- -5'
24743 3' -52.9 NC_005264.1 + 104719 0.66 0.974127
Target:  5'- gGCUgCGcGAGgUCGCGCaGCAgcgcCGCCUACa -3'
miRNA:   3'- gCGA-GC-UUUgAGUGCG-CGU----GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 108502 0.66 0.974127
Target:  5'- gGCUCGccAUaaACGcCGCGCGCUUACu -3'
miRNA:   3'- gCGAGCuuUGagUGC-GCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 159558 0.66 0.979087
Target:  5'- aGCUCacGACUCugGCGCugaaugccCACCcACc -3'
miRNA:   3'- gCGAGcuUUGAGugCGCGu-------GUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 94108 0.66 0.979087
Target:  5'- cCGCcCGAggUUCugGCGC-CGCUg-- -3'
miRNA:   3'- -GCGaGCUuuGAGugCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 131693 0.67 0.958093
Target:  5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3'
miRNA:   3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 37770 0.67 0.958093
Target:  5'- uGCUUGAGACUCGCcuuCGCGCCg-- -3'
miRNA:   3'- gCGAGCUUUGAGUGcgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 84853 0.67 0.954214
Target:  5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3'
miRNA:   3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 27706 0.72 0.790585
Target:  5'- aCGCUCGcu-CUCaAUGCGCACACUa-- -3'
miRNA:   3'- -GCGAGCuuuGAG-UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 112278 0.72 0.80881
Target:  5'- gCGCUUcccg--CACGCGCGCGCCUAg -3'
miRNA:   3'- -GCGAGcuuugaGUGCGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 88118 0.71 0.851326
Target:  5'- aGCagGAGACaguuUCGCGCGCcGCGcCCUACa -3'
miRNA:   3'- gCGagCUUUG----AGUGCGCG-UGU-GGAUG- -5'
24743 3' -52.9 NC_005264.1 + 69577 0.7 0.859242
Target:  5'- aGC-CGggGCcCugGCGC-CACCUAg -3'
miRNA:   3'- gCGaGCuuUGaGugCGCGuGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 139414 0.7 0.859242
Target:  5'- -aCUCGAGACgggcaccgCugGCGUACGCgUGCu -3'
miRNA:   3'- gcGAGCUUUGa-------GugCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 154123 0.7 0.881693
Target:  5'- aGC-CGAAACggcggcCACGCGCGCGCagaGCg -3'
miRNA:   3'- gCGaGCUUUGa-----GUGCGCGUGUGga-UG- -5'
24743 3' -52.9 NC_005264.1 + 66512 0.7 0.891472
Target:  5'- gCGCUCGAcgAGCUCGCuuucGCGCaguacagcaacgcggACGCCgagGCg -3'
miRNA:   3'- -GCGAGCU--UUGAGUG----CGCG---------------UGUGGa--UG- -5'
24743 3' -52.9 NC_005264.1 + 95855 0.69 0.895522
Target:  5'- uCGC-CGuuGCUCGCccagGCGUACACCaACg -3'
miRNA:   3'- -GCGaGCuuUGAGUG----CGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 116879 0.69 0.902082
Target:  5'- aGCUUacuGCUCGCGCGCuguuuUACCUAg -3'
miRNA:   3'- gCGAGcuuUGAGUGCGCGu----GUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 47598 0.69 0.902082
Target:  5'- aCGCguuggggGAGACUCGCGCGaacgGCGCgUACa -3'
miRNA:   3'- -GCGag-----CUUUGAGUGCGCg---UGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 49196 0.67 0.954214
Target:  5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3'
miRNA:   3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5'
24743 3' -52.9 NC_005264.1 + 27666 0.67 0.954214
Target:  5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3'
miRNA:   3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.