Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24743 | 3' | -52.9 | NC_005264.1 | + | 66512 | 0.7 | 0.891472 |
Target: 5'- gCGCUCGAcgAGCUCGCuuucGCGCaguacagcaacgcggACGCCgagGCg -3' miRNA: 3'- -GCGAGCU--UUGAGUG----CGCG---------------UGUGGa--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 154123 | 0.7 | 0.881693 |
Target: 5'- aGC-CGAAACggcggcCACGCGCGCGCagaGCg -3' miRNA: 3'- gCGaGCUUUGa-----GUGCGCGUGUGga-UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 139414 | 0.7 | 0.859242 |
Target: 5'- -aCUCGAGACgggcaccgCugGCGUACGCgUGCu -3' miRNA: 3'- gcGAGCUUUGa-------GugCGCGUGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 69577 | 0.7 | 0.859242 |
Target: 5'- aGC-CGggGCcCugGCGC-CACCUAg -3' miRNA: 3'- gCGaGCuuUGaGugCGCGuGUGGAUg -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 88118 | 0.71 | 0.851326 |
Target: 5'- aGCagGAGACaguuUCGCGCGCcGCGcCCUACa -3' miRNA: 3'- gCGagCUUUG----AGUGCGCG-UGU-GGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 112278 | 0.72 | 0.80881 |
Target: 5'- gCGCUUcccg--CACGCGCGCGCCUAg -3' miRNA: 3'- -GCGAGcuuugaGUGCGCGUGUGGAUg -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 27706 | 0.72 | 0.790585 |
Target: 5'- aCGCUCGcu-CUCaAUGCGCACACUa-- -3' miRNA: 3'- -GCGAGCuuuGAG-UGCGCGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 30830 | 0.73 | 0.719617 |
Target: 5'- uGCUCGAAcggGCUCGCGUcgucgucggcggcgGCGCGCCg-- -3' miRNA: 3'- gCGAGCUU---UGAGUGCG--------------CGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 47598 | 0.69 | 0.902082 |
Target: 5'- aCGCguuggggGAGACUCGCGCGaacgGCGCgUACa -3' miRNA: 3'- -GCGag-----CUUUGAGUGCGCg---UGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 86454 | 0.69 | 0.910859 |
Target: 5'- aCGCccUCGAGGCgaaCACGUGguuagcggguaccaaCGCGCCUGCg -3' miRNA: 3'- -GCG--AGCUUUGa--GUGCGC---------------GUGUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 84853 | 0.67 | 0.954214 |
Target: 5'- uGCUCGGuaucgcccGCUCcgguACGCGCgGCGCCgGCa -3' miRNA: 3'- gCGAGCUu-------UGAG----UGCGCG-UGUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 27666 | 0.67 | 0.954214 |
Target: 5'- gCGCUCGGAcCgaggUACGCGgCugGCCUcuGCc -3' miRNA: 3'- -GCGAGCUUuGa---GUGCGC-GugUGGA--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 49196 | 0.67 | 0.954214 |
Target: 5'- uGCUCaagcGCUCACGCccGCGCuACCUGg -3' miRNA: 3'- gCGAGcuu-UGAGUGCG--CGUG-UGGAUg -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 131549 | 0.68 | 0.950099 |
Target: 5'- aGUcggCGAAGCUCACGCuucugcaugugcGCgGCACCUGg -3' miRNA: 3'- gCGa--GCUUUGAGUGCG------------CG-UGUGGAUg -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 38397 | 0.68 | 0.941149 |
Target: 5'- aCGC-CGAGACagaugC-CGCGUACGcCCUGCu -3' miRNA: 3'- -GCGaGCUUUGa----GuGCGCGUGU-GGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 100234 | 0.68 | 0.941149 |
Target: 5'- uGCUCGGAACgUC-CGCGC-CGCUa-- -3' miRNA: 3'- gCGAGCUUUG-AGuGCGCGuGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 29773 | 0.68 | 0.941149 |
Target: 5'- aGCUC---GCUCGCGgcuCGCACGCC-ACg -3' miRNA: 3'- gCGAGcuuUGAGUGC---GCGUGUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 117627 | 0.68 | 0.936308 |
Target: 5'- gCGCUCGGcgUUCAUGgGCAUGCUagACa -3' miRNA: 3'- -GCGAGCUuuGAGUGCgCGUGUGGa-UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 152255 | 0.68 | 0.933285 |
Target: 5'- uCGCggucgCGGAcuuggccaggauuuuGCUUAUGuUGCGCGCCUGCg -3' miRNA: 3'- -GCGa----GCUU---------------UGAGUGC-GCGUGUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 49497 | 0.69 | 0.920304 |
Target: 5'- uGCguagCGGGuuuacAUUCAUGCGCAggUACCUGCa -3' miRNA: 3'- gCGa---GCUU-----UGAGUGCGCGU--GUGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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