Results 101 - 102 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24743 | 3' | -52.9 | NC_005264.1 | + | 152255 | 0.68 | 0.933285 |
Target: 5'- uCGCggucgCGGAcuuggccaggauuuuGCUUAUGuUGCGCGCCUGCg -3' miRNA: 3'- -GCGa----GCUU---------------UGAGUGC-GCGUGUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 140818 | 0.73 | 0.712535 |
Target: 5'- aGC-CGAAcGCUCGCGgGCAaaaaACCUACg -3' miRNA: 3'- gCGaGCUU-UGAGUGCgCGUg---UGGAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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