Results 41 - 60 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24743 | 3' | -52.9 | NC_005264.1 | + | 40182 | 0.66 | 0.981285 |
Target: 5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3' miRNA: 3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 104719 | 0.66 | 0.974127 |
Target: 5'- gGCUgCGcGAGgUCGCGCaGCAgcgcCGCCUACa -3' miRNA: 3'- gCGA-GC-UUUgAGUGCG-CGU----GUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 76449 | 0.66 | 0.974127 |
Target: 5'- -uCUCGAAGgaCACGCuGCGCAaCUGCu -3' miRNA: 3'- gcGAGCUUUgaGUGCG-CGUGUgGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 82248 | 0.66 | 0.974127 |
Target: 5'- uGCuuUCGggGCUCGCGacagGCGgCACCggaGCg -3' miRNA: 3'- gCG--AGCuuUGAGUGCg---CGU-GUGGa--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 131693 | 0.67 | 0.958093 |
Target: 5'- gGCUCGcAAGCgua-GCGUGgGCCUGCg -3' miRNA: 3'- gCGAGC-UUUGagugCGCGUgUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 5940 | 0.67 | 0.958093 |
Target: 5'- gGCUCGGAACcccUCGCGCagggcagcgGCGCAUUcGCg -3' miRNA: 3'- gCGAGCUUUG---AGUGCG---------CGUGUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 33098 | 0.67 | 0.958093 |
Target: 5'- cCGCUUGcuuGCUCgcugACGCGCAUACUg-- -3' miRNA: 3'- -GCGAGCuu-UGAG----UGCGCGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 92070 | 0.67 | 0.961741 |
Target: 5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3' miRNA: 3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 121440 | 0.67 | 0.961741 |
Target: 5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3' miRNA: 3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 45542 | 0.67 | 0.961741 |
Target: 5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3' miRNA: 3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 35013 | 0.67 | 0.965162 |
Target: 5'- gCGCUCGAAGagga-GCGCugGCCg-- -3' miRNA: 3'- -GCGAGCUUUgagugCGCGugUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 114920 | 0.66 | 0.971349 |
Target: 5'- cCG-UCGAuaaGGCUcCGCGgGCACACgUGCg -3' miRNA: 3'- -GCgAGCU---UUGA-GUGCgCGUGUGgAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 129151 | 0.66 | 0.971349 |
Target: 5'- gGCUCGGAGCgauGCGCGUuaGCC-ACg -3' miRNA: 3'- gCGAGCUUUGag-UGCGCGugUGGaUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 59774 | 0.66 | 0.970475 |
Target: 5'- aCGCUucgCGGGACUCgucgcccgcaggggGCGCGUagcGCACCaUGCu -3' miRNA: 3'- -GCGA---GCUUUGAG--------------UGCGCG---UGUGG-AUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 645 | 0.67 | 0.968363 |
Target: 5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3' miRNA: 3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 142861 | 0.67 | 0.965162 |
Target: 5'- gCGgUCGGuuuguugcgucGACUCGCGC-CGCGCCUu- -3' miRNA: 3'- -GCgAGCU-----------UUGAGUGCGcGUGUGGAug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 159209 | 0.66 | 0.981285 |
Target: 5'- uCGCgaCGAAugUCAgCGCGCcCGCCcucGCg -3' miRNA: 3'- -GCGa-GCUUugAGU-GCGCGuGUGGa--UG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 65625 | 0.76 | 0.58838 |
Target: 5'- gGCUCGuggguACcCGCGCGCGCACCg-- -3' miRNA: 3'- gCGAGCuu---UGaGUGCGCGUGUGGaug -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 139561 | 0.75 | 0.634093 |
Target: 5'- gCGCUCGcuGCaCGCGCGCGCgaaauagacaacgugACCUGCu -3' miRNA: 3'- -GCGAGCuuUGaGUGCGCGUG---------------UGGAUG- -5' |
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24743 | 3' | -52.9 | NC_005264.1 | + | 61250 | 0.74 | 0.69212 |
Target: 5'- gCGCUCc-AGCUCACG-GCGCGCCUcgGCg -3' miRNA: 3'- -GCGAGcuUUGAGUGCgCGUGUGGA--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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