miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24743 3' -52.9 NC_005264.1 + 143734 0.66 0.974127
Target:  5'- uGCUCGu--CUC-CGCGC-CGCCg-- -3'
miRNA:   3'- gCGAGCuuuGAGuGCGCGuGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 108502 0.66 0.974127
Target:  5'- gGCUCGccAUaaACGcCGCGCGCUUACu -3'
miRNA:   3'- gCGAGCuuUGagUGC-GCGUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 5998 0.66 0.971349
Target:  5'- aGCgCGgcGgUCGCuGUGCGCACCUGa -3'
miRNA:   3'- gCGaGCuuUgAGUG-CGCGUGUGGAUg -5'
24743 3' -52.9 NC_005264.1 + 129151 0.66 0.971349
Target:  5'- gGCUCGGAGCgauGCGCGUuaGCC-ACg -3'
miRNA:   3'- gCGAGCUUUGag-UGCGCGugUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 114920 0.66 0.971349
Target:  5'- cCG-UCGAuaaGGCUcCGCGgGCACACgUGCg -3'
miRNA:   3'- -GCgAGCU---UUGA-GUGCgCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 59774 0.66 0.970475
Target:  5'- aCGCUucgCGGGACUCgucgcccgcaggggGCGCGUagcGCACCaUGCu -3'
miRNA:   3'- -GCGA---GCUUUGAG--------------UGCGCG---UGUGG-AUG- -5'
24743 3' -52.9 NC_005264.1 + 645 0.67 0.968363
Target:  5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3'
miRNA:   3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5'
24743 3' -52.9 NC_005264.1 + 119672 0.67 0.968363
Target:  5'- gCGCgauaGAGGCUCACGCGCcCcCCc-- -3'
miRNA:   3'- -GCGag--CUUUGAGUGCGCGuGuGGaug -5'
24743 3' -52.9 NC_005264.1 + 21807 0.67 0.968363
Target:  5'- cCGCaUgGAGACUCGCGa-CACGCCa-- -3'
miRNA:   3'- -GCG-AgCUUUGAGUGCgcGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 85121 0.67 0.965162
Target:  5'- gCGCauugCGAGACaaaugcCACGCGUACuuCUACg -3'
miRNA:   3'- -GCGa---GCUUUGa-----GUGCGCGUGugGAUG- -5'
24743 3' -52.9 NC_005264.1 + 154040 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 35013 0.67 0.965162
Target:  5'- gCGCUCGAAGagga-GCGCugGCCg-- -3'
miRNA:   3'- -GCGAGCUUUgagugCGCGugUGGaug -5'
24743 3' -52.9 NC_005264.1 + 23413 0.67 0.965162
Target:  5'- gGC-CGAg---CACGCGUACGCCaGCg -3'
miRNA:   3'- gCGaGCUuugaGUGCGCGUGUGGaUG- -5'
24743 3' -52.9 NC_005264.1 + 142861 0.67 0.965162
Target:  5'- gCGgUCGGuuuguugcgucGACUCGCGC-CGCGCCUu- -3'
miRNA:   3'- -GCgAGCU-----------UUGAGUGCGcGUGUGGAug -5'
24743 3' -52.9 NC_005264.1 + 24699 0.67 0.964159
Target:  5'- aCGC-CGAAgauggucgguaugaGgUCugGCGuUACGCCUACg -3'
miRNA:   3'- -GCGaGCUU--------------UgAGugCGC-GUGUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 84139 0.67 0.963136
Target:  5'- aGCUCGcGAGCcCcgggaaguggucgcaGCGCGCGCGCCg-- -3'
miRNA:   3'- gCGAGC-UUUGaG---------------UGCGCGUGUGGaug -5'
24743 3' -52.9 NC_005264.1 + 57490 0.67 0.961741
Target:  5'- gGCggCGAAgauGCUgGCGCGCGCGgCgGCg -3'
miRNA:   3'- gCGa-GCUU---UGAgUGCGCGUGUgGaUG- -5'
24743 3' -52.9 NC_005264.1 + 92070 0.67 0.961741
Target:  5'- uGCUCGAgagGAUUCAcCGCGUuguugcCGCUUGCu -3'
miRNA:   3'- gCGAGCU---UUGAGU-GCGCGu-----GUGGAUG- -5'
24743 3' -52.9 NC_005264.1 + 45542 0.67 0.961741
Target:  5'- uCGCacgCGGAgaGCggCAuCGCGCACGCgUACg -3'
miRNA:   3'- -GCGa--GCUU--UGa-GU-GCGCGUGUGgAUG- -5'
24743 3' -52.9 NC_005264.1 + 121440 0.67 0.961741
Target:  5'- gCGUgucCGAGACacaGCGCGCG-GCCUACg -3'
miRNA:   3'- -GCGa--GCUUUGag-UGCGCGUgUGGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.