miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24744 3' -49.9 NC_005264.1 + 73692 0.66 0.996707
Target:  5'- gGGCAAAaUGGUUUUCCcuGG-CGCCAg- -3'
miRNA:   3'- -UCGUUUgAUCAAGAGG--UCaGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 8713 0.66 0.996707
Target:  5'- aAGCgAGACUAGgccuacccUCUCCGGUgaGCCGg- -3'
miRNA:   3'- -UCG-UUUGAUCa-------AGAGGUCAg-CGGUac -5'
24744 3' -49.9 NC_005264.1 + 61603 0.66 0.996118
Target:  5'- cGCGAGCUGGaag-CCcGUCGCCGc- -3'
miRNA:   3'- uCGUUUGAUCaagaGGuCAGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 3857 0.66 0.996118
Target:  5'- cGCAGACUcgcag-CCgaGGUCGCCGUGg -3'
miRNA:   3'- uCGUUUGAucaagaGG--UCAGCGGUAC- -5'
24744 3' -49.9 NC_005264.1 + 122883 0.66 0.996118
Target:  5'- cGCAGACUcgcag-CCgaGGUCGCCGUGg -3'
miRNA:   3'- uCGUUUGAucaagaGG--UCAGCGGUAC- -5'
24744 3' -49.9 NC_005264.1 + 147053 0.66 0.99468
Target:  5'- uAGCGGGCUuucuGUUCUCuCuGcUCGCCcgGa -3'
miRNA:   3'- -UCGUUUGAu---CAAGAG-GuC-AGCGGuaC- -5'
24744 3' -49.9 NC_005264.1 + 110406 0.66 0.99468
Target:  5'- cGGCAGGCUcgagccAGUacuUCUCggccaGGUCGCCcgGg -3'
miRNA:   3'- -UCGUUUGA------UCA---AGAGg----UCAGCGGuaC- -5'
24744 3' -49.9 NC_005264.1 + 105837 0.67 0.993814
Target:  5'- cGGCGGAacGGUUCUCguGcauggcccuguUCGCCGUGu -3'
miRNA:   3'- -UCGUUUgaUCAAGAGguC-----------AGCGGUAC- -5'
24744 3' -49.9 NC_005264.1 + 64109 0.67 0.992839
Target:  5'- cGCAAAC-AGauucagUCUCguGUCGCCGa- -3'
miRNA:   3'- uCGUUUGaUCa-----AGAGguCAGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 38206 0.67 0.990522
Target:  5'- cGGCccgaUAGcggCUCCGGUCGCCGa- -3'
miRNA:   3'- -UCGuuugAUCaa-GAGGUCAGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 157233 0.67 0.990522
Target:  5'- cGGCccgaUAGcggCUCCGGUCGCCGa- -3'
miRNA:   3'- -UCGuuugAUCaa-GAGGUCAGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 127872 0.67 0.989161
Target:  5'- cGCGAAUgGGgUCUCC-GUCGCCGc- -3'
miRNA:   3'- uCGUUUGaUCaAGAGGuCAGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 105582 0.68 0.979954
Target:  5'- cGCGGGCUAGggCUCgAG-CGCCu-- -3'
miRNA:   3'- uCGUUUGAUCaaGAGgUCaGCGGuac -5'
24744 3' -49.9 NC_005264.1 + 27839 0.69 0.969148
Target:  5'- gGGCAGACUccgUCUCCAG-CGUCGa- -3'
miRNA:   3'- -UCGUUUGAucaAGAGGUCaGCGGUac -5'
24744 3' -49.9 NC_005264.1 + 114660 0.69 0.965898
Target:  5'- gAGCAcGCUAGcUUUCCAGaCGCCu-- -3'
miRNA:   3'- -UCGUuUGAUCaAGAGGUCaGCGGuac -5'
24744 3' -49.9 NC_005264.1 + 85684 0.71 0.941296
Target:  5'- uGGCAAGCggAGUUCg-CGGUCGgCAUGu -3'
miRNA:   3'- -UCGUUUGa-UCAAGagGUCAGCgGUAC- -5'
24744 3' -49.9 NC_005264.1 + 127740 0.72 0.907393
Target:  5'- aAGCGGACUAGgccuacccUCUCCGGUgaGCCGg- -3'
miRNA:   3'- -UCGUUUGAUCa-------AGAGGUCAg-CGGUac -5'
24744 3' -49.9 NC_005264.1 + 125198 0.74 0.839473
Target:  5'- uGCAcgAugUGGggCacgCCGGUCGCCAUGg -3'
miRNA:   3'- uCGU--UugAUCaaGa--GGUCAGCGGUAC- -5'
24744 3' -49.9 NC_005264.1 + 6171 0.74 0.839473
Target:  5'- uGCAcgAugUGGggCacgCCGGUCGCCAUGg -3'
miRNA:   3'- uCGU--UugAUCaaGa--GGUCAGCGGUAC- -5'
24744 3' -49.9 NC_005264.1 + 157749 0.74 0.812841
Target:  5'- cGCAGACUGGcUCUCC--UCGCCAa- -3'
miRNA:   3'- uCGUUUGAUCaAGAGGucAGCGGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.