miRNA display CGI


Results 1 - 20 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24745 3' -53.5 NC_005264.1 + 65294 0.76 0.582557
Target:  5'- -aGCAGCAugucuggcucuugccCGCUGCCaCGCCAcaGCCGCg -3'
miRNA:   3'- ggUGUUGU---------------GCGAUGGaGCGGU--UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 107210 0.77 0.508727
Target:  5'- gCgGCGGCGCGCgcgguugGCauucggCGCCAGCCGCg -3'
miRNA:   3'- -GgUGUUGUGCGa------UGga----GCGGUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 121268 0.77 0.508727
Target:  5'- cCCACGACGCGCggaACaCUUGCCGAaaCGCa -3'
miRNA:   3'- -GGUGUUGUGCGa--UG-GAGCGGUUg-GCG- -5'
24745 3' -53.5 NC_005264.1 + 82713 0.77 0.528347
Target:  5'- gCCACGACA-GCggccCCUUGCgGACCGCu -3'
miRNA:   3'- -GGUGUUGUgCGau--GGAGCGgUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 64306 0.77 0.528347
Target:  5'- cCCACAGCGCGUUGCCgcuGCCAagACUGa -3'
miRNA:   3'- -GGUGUUGUGCGAUGGag-CGGU--UGGCg -5'
24745 3' -53.5 NC_005264.1 + 127054 0.76 0.54824
Target:  5'- gCCACGACgGCGCcACCgCGCCcuCCGCc -3'
miRNA:   3'- -GGUGUUG-UGCGaUGGaGCGGuuGGCG- -5'
24745 3' -53.5 NC_005264.1 + 131229 0.76 0.577479
Target:  5'- gUCGCAgggcgauGCGCGCcGCCUCGCCAGagaGCa -3'
miRNA:   3'- -GGUGU-------UGUGCGaUGGAGCGGUUgg-CG- -5'
24745 3' -53.5 NC_005264.1 + 113484 0.76 0.578493
Target:  5'- gCCACGGuCGCGCgag--UGCCAACCGCg -3'
miRNA:   3'- -GGUGUU-GUGCGauggaGCGGUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 58116 0.76 0.578493
Target:  5'- -gGCGGCGCuGCUgcgcgACCUCGCgCAGCCGUc -3'
miRNA:   3'- ggUGUUGUG-CGA-----UGGAGCG-GUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 58301 0.77 0.508727
Target:  5'- cUCugAugGCGC-GCUUCGCCGGCUGCc -3'
miRNA:   3'- -GGugUugUGCGaUGGAGCGGUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 56315 0.77 0.499033
Target:  5'- uCCGCGGcCGCGCUGCCgcCGUCGcgcACCGCc -3'
miRNA:   3'- -GGUGUU-GUGCGAUGGa-GCGGU---UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 8613 0.77 0.489422
Target:  5'- uCCGCAACGCGC-ACCgguaggCGCUucACCGCc -3'
miRNA:   3'- -GGUGUUGUGCGaUGGa-----GCGGu-UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 142616 0.83 0.24667
Target:  5'- gCCACGcCGgGCUACCUCGCCuGCCGa -3'
miRNA:   3'- -GGUGUuGUgCGAUGGAGCGGuUGGCg -5'
24745 3' -53.5 NC_005264.1 + 102188 0.8 0.393606
Target:  5'- gCCGCGACACGUUaagucgacccugaucGCCUCGCgAgauaggGCCGCa -3'
miRNA:   3'- -GGUGUUGUGCGA---------------UGGAGCGgU------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 68584 0.79 0.398701
Target:  5'- gCCAgAACugGC-ACCUUGCCAuuuucgugugGCCGCg -3'
miRNA:   3'- -GGUgUUGugCGaUGGAGCGGU----------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 68977 0.79 0.432825
Target:  5'- gCCACGGCACGaCUACC-CGCCGcauuauuGCgCGCa -3'
miRNA:   3'- -GGUGUUGUGC-GAUGGaGCGGU-------UG-GCG- -5'
24745 3' -53.5 NC_005264.1 + 83416 0.78 0.460199
Target:  5'- cCCGCAccgccCACGCUggguuccgccgcgGCCUCGCCAcgcCCGCg -3'
miRNA:   3'- -GGUGUu----GUGCGA-------------UGGAGCGGUu--GGCG- -5'
24745 3' -53.5 NC_005264.1 + 20626 0.78 0.461128
Target:  5'- aCC-CAAC-CGCUGCCUCGCgAgauuacacggaACCGCg -3'
miRNA:   3'- -GGuGUUGuGCGAUGGAGCGgU-----------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 119186 0.78 0.461128
Target:  5'- gCGCAGCGCGCcgaccguacaccUacgACCUCGCCGGCgCGCu -3'
miRNA:   3'- gGUGUUGUGCG------------A---UGGAGCGGUUG-GCG- -5'
24745 3' -53.5 NC_005264.1 + 155769 0.78 0.470465
Target:  5'- cCCGCAGCGCGaCggcgccgGCCggCGCCGucGCCGCu -3'
miRNA:   3'- -GGUGUUGUGC-Ga------UGGa-GCGGU--UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.