miRNA display CGI


Results 21 - 40 of 515 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24745 3' -53.5 NC_005264.1 + 123914 0.66 0.979615
Target:  5'- -aGCAGCACGUUugugaACCUCGaCGuuacGCUGCu -3'
miRNA:   3'- ggUGUUGUGCGA-----UGGAGCgGU----UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 48229 0.66 0.979615
Target:  5'- gCugGGCAUGuCUGCCUgCGgCAAgCGUg -3'
miRNA:   3'- gGugUUGUGC-GAUGGA-GCgGUUgGCG- -5'
24745 3' -53.5 NC_005264.1 + 115275 0.66 0.979615
Target:  5'- gCCAUAucugGCACGagGCCuUCGUCAcagaaaucuACCGCg -3'
miRNA:   3'- -GGUGU----UGUGCgaUGG-AGCGGU---------UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 139250 0.66 0.979615
Target:  5'- aCCGCGAgACGaCUGcCCUCuGCaagaaGAuCCGCa -3'
miRNA:   3'- -GGUGUUgUGC-GAU-GGAG-CGg----UU-GGCG- -5'
24745 3' -53.5 NC_005264.1 + 157182 0.66 0.979615
Target:  5'- aCGCAGCAUGCgUGCgaCuaCcGCCGCg -3'
miRNA:   3'- gGUGUUGUGCG-AUGgaGcgGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 140978 0.66 0.979615
Target:  5'- aCUACAACA-GUUgaACCUCGaCCAGCgGg -3'
miRNA:   3'- -GGUGUUGUgCGA--UGGAGC-GGUUGgCg -5'
24745 3' -53.5 NC_005264.1 + 62807 0.66 0.979615
Target:  5'- uCCACcGgACGCaGCagCGCC-GCCGCg -3'
miRNA:   3'- -GGUGuUgUGCGaUGgaGCGGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 71742 0.66 0.979393
Target:  5'- uCCGCGACagccaucGCGUUACgacuaGCCGACCuGCu -3'
miRNA:   3'- -GGUGUUG-------UGCGAUGgag--CGGUUGG-CG- -5'
24745 3' -53.5 NC_005264.1 + 25835 0.66 0.979393
Target:  5'- aCCG-AACAgGCUGgacgcaugaagcgUCUCGCUuACCGCg -3'
miRNA:   3'- -GGUgUUGUgCGAU-------------GGAGCGGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 38071 0.66 0.977312
Target:  5'- cUCACAAUGC-CUACC-CGCCGugCu- -3'
miRNA:   3'- -GGUGUUGUGcGAUGGaGCGGUugGcg -5'
24745 3' -53.5 NC_005264.1 + 78550 0.66 0.977312
Target:  5'- aCGCuauGCGCGCUuugcGCgUCGCUuuuGCUGUg -3'
miRNA:   3'- gGUGu--UGUGCGA----UGgAGCGGu--UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 160159 0.66 0.977312
Target:  5'- uCCGCcacCACGCUGCCcUCGCgGucgggGCCa- -3'
miRNA:   3'- -GGUGuu-GUGCGAUGG-AGCGgU-----UGGcg -5'
24745 3' -53.5 NC_005264.1 + 135172 0.66 0.977312
Target:  5'- gC-CAGC-CGCgUACCUCGguCCGagcGCCGCg -3'
miRNA:   3'- gGuGUUGuGCG-AUGGAGC--GGU---UGGCG- -5'
24745 3' -53.5 NC_005264.1 + 33796 0.66 0.977312
Target:  5'- gCCGC-GCACGCcGCuuuggaccggCUCGCCGGCaagGCu -3'
miRNA:   3'- -GGUGuUGUGCGaUG----------GAGCGGUUGg--CG- -5'
24745 3' -53.5 NC_005264.1 + 81601 0.66 0.977312
Target:  5'- uCgACAACAUGCcGCUgCGCCAgggacgGCCGa -3'
miRNA:   3'- -GgUGUUGUGCGaUGGaGCGGU------UGGCg -5'
24745 3' -53.5 NC_005264.1 + 8309 0.66 0.977312
Target:  5'- gCCAucgcCGGCACGCUugUUUGCgcGCgGCa -3'
miRNA:   3'- -GGU----GUUGUGCGAugGAGCGguUGgCG- -5'
24745 3' -53.5 NC_005264.1 + 71274 0.66 0.977312
Target:  5'- uCCGCGACAa---GCCUCGugcccCCcGCCGCg -3'
miRNA:   3'- -GGUGUUGUgcgaUGGAGC-----GGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 43537 0.66 0.977312
Target:  5'- -aACAGCAacgucugcaGCUGCC-CaGCC-ACCGCg -3'
miRNA:   3'- ggUGUUGUg--------CGAUGGaG-CGGuUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 158356 0.66 0.977312
Target:  5'- uCCGCu-CGCGac-CCUCGCgCGACUGUu -3'
miRNA:   3'- -GGUGuuGUGCgauGGAGCG-GUUGGCG- -5'
24745 3' -53.5 NC_005264.1 + 141480 0.66 0.977312
Target:  5'- uCCugAACACgGCUacaGCCUCauCCGGCCccgGCg -3'
miRNA:   3'- -GGugUUGUG-CGA---UGGAGc-GGUUGG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.