miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24745 5' -58.4 NC_005264.1 + 117501 0.66 0.803985
Target:  5'- ---cGCCuCGUCuCGGGCGCGgCgcGUCUg -3'
miRNA:   3'- uauaCGG-GCAG-GUCCGUGCgGa-CAGA- -5'
24745 5' -58.4 NC_005264.1 + 23376 0.66 0.795067
Target:  5'- ---gGUCCGaUCCAGaCACGCCUGg-- -3'
miRNA:   3'- uauaCGGGC-AGGUCcGUGCGGACaga -5'
24745 5' -58.4 NC_005264.1 + 11957 0.66 0.786004
Target:  5'- --uUGCCUGaCgAGGuCGCGCCaUGUCUu -3'
miRNA:   3'- uauACGGGCaGgUCC-GUGCGG-ACAGA- -5'
24745 5' -58.4 NC_005264.1 + 8306 0.67 0.758029
Target:  5'- -cGUGCCaucgCC-GGCACGCUUGUUUg -3'
miRNA:   3'- uaUACGGgca-GGuCCGUGCGGACAGA- -5'
24745 5' -58.4 NC_005264.1 + 18531 0.67 0.738812
Target:  5'- ---gGCgCCGUCUcccccugaGGGCGCGCCggcGUCa -3'
miRNA:   3'- uauaCG-GGCAGG--------UCCGUGCGGa--CAGa -5'
24745 5' -58.4 NC_005264.1 + 62863 0.67 0.70932
Target:  5'- ---cGCCuCGUCCacAGGCGCuugGCCUcGUCUa -3'
miRNA:   3'- uauaCGG-GCAGG--UCCGUG---CGGA-CAGA- -5'
24745 5' -58.4 NC_005264.1 + 95836 0.67 0.70932
Target:  5'- ---cGCuCCGUCCAGGCAgcacuCGCC-GUUg -3'
miRNA:   3'- uauaCG-GGCAGGUCCGU-----GCGGaCAGa -5'
24745 5' -58.4 NC_005264.1 + 53742 0.68 0.689319
Target:  5'- -cGUGCCCGUCUccGGCGcCGuCCUcGUCUu -3'
miRNA:   3'- uaUACGGGCAGGu-CCGU-GC-GGA-CAGA- -5'
24745 5' -58.4 NC_005264.1 + 44847 0.69 0.638644
Target:  5'- -aGUGUCCGUCCGGGU--GCC-GUCg -3'
miRNA:   3'- uaUACGGGCAGGUCCGugCGGaCAGa -5'
24745 5' -58.4 NC_005264.1 + 27157 0.7 0.587833
Target:  5'- ---gGCCCGUCCGuGCAgGCC-GUCUu -3'
miRNA:   3'- uauaCGGGCAGGUcCGUgCGGaCAGA- -5'
24745 5' -58.4 NC_005264.1 + 5083 0.72 0.452052
Target:  5'- ---aGCCCGUCCGGGgagggguccucUACGCCUGg-- -3'
miRNA:   3'- uauaCGGGCAGGUCC-----------GUGCGGACaga -5'
24745 5' -58.4 NC_005264.1 + 124110 0.72 0.452052
Target:  5'- ---aGCCCGUCCGGGgagggguccucUACGCCUGg-- -3'
miRNA:   3'- uauaCGGGCAGGUCC-----------GUGCGGACaga -5'
24745 5' -58.4 NC_005264.1 + 148747 1.05 0.002874
Target:  5'- gAUAUGCCCGUCCAGGCACGCCUGUCUc -3'
miRNA:   3'- -UAUACGGGCAGGUCCGUGCGGACAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.